相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Buxus and Tetracentron genomes help resolve eudicot genome history
Andre S. Chanderbali et al.
NATURE COMMUNICATIONS (2022)
Underwater CAM photosynthesis elucidated by Isoetes genome
David Wickell et al.
NATURE COMMUNICATIONS (2021)
The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts
Tao Wan et al.
NATURE COMMUNICATIONS (2021)
Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome
Liuyu Qin et al.
NATURE PLANTS (2021)
The Scaling of Genome Size and Cell Size Limits Maximum Rates of Photosynthesis with Implications for Ecological Strategies
Adam B. Roddy et al.
INTERNATIONAL JOURNAL OF PLANT SCIENCES (2020)
Fast and accurate long-read assembly with wtdbg2
Jue Ruan et al.
NATURE METHODS (2020)
Kalanchoe PPC1 Is Essential for Crassulacean Acid Metabolism and the Regulation of Core Circadian Clock and Guard Cell Signaling Genes[CC-BY]
Susanna F. Boxall et al.
PLANT CELL (2020)
A class I cytosolic HSP20 of rice enhances heat and salt tolerance in different organisms
Liu-Ming Guo et al.
SCIENTIFIC REPORTS (2020)
The role of cis-elements in the evolution of crassulacean acid metabolism photosynthesis
Li-Yu Chen et al.
HORTICULTURE RESEARCH (2020)
Peeling back the layers of crassulacean acid metabolism: functional differentiation between Kalanchoe fedtschenkoi epidermis and mesophyll proteomes
Paul E. Abraham et al.
PLANT JOURNAL (2020)
Insights into the Diversification and Evolution of R2R3-MYB Transcription Factors in Plants1
Chen-Kun Jiang et al.
PLANT PHYSIOLOGY (2020)
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
T. Rhyker Ranallo-Benavidez et al.
NATURE COMMUNICATIONS (2020)
Dynamics of intracellular mannan and cell wall folding in the drought responses of succulent Aloe species
Louise Isager Ahl et al.
PLANT CELL AND ENVIRONMENT (2019)
Understanding trait diversity associated with crassulacean acid metabolism (CAM)
Nicholas A. Niechayev et al.
CURRENT OPINION IN PLANT BIOLOGY (2019)
Proximate composition, nutritional evaluation and functional properties of a promising food: Arabian wax Cissus (Cissus rotundifolia Forssk) leaves
Wedad Q. AL-Bukhaiti et al.
JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE (2019)
Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album
Ching Man Wai et al.
PLOS GENETICS (2019)
MaizeGDB 2018: the maize multi-genome genetics and genomics database
John L. Portwood et al.
NUCLEIC ACIDS RESEARCH (2019)
The Pfam protein families database in 2019
Sara El-Gebali et al.
NUCLEIC ACIDS RESEARCH (2019)
Genome size, chromosome number determination, and analysis of the repetitive elements in Cissus quadrangularis
Duncan Kiragu Gichuki et al.
PEERJ (2019)
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
Shujun Ou et al.
PLANT PHYSIOLOGY (2018)
Genome size variation and evolution in the grape family Vitaceae
Zhao-Fu Chu et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2018)
A new phylogenetic tribal classification of the grape family (Vitaceae)
Jun Wen et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2018)
Living under temporarily arid conditions - succulence as an adaptive strategy
Urs Eggli et al.
Bradleya (2018)
PGD: Pineapple Genomics Database
Huimin Xu et al.
HORTICULTURE RESEARCH (2018)
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Michael J. Roach et al.
BMC BIOINFORMATICS (2018)
Oak genome reveals facets of long lifespan
Christophe Plomion et al.
NATURE PLANTS (2018)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Reconstructing the genome of the most recent common ancestor of flowering plants
Florent Murat et al.
NATURE GENETICS (2017)
Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets
Liping Zeng et al.
NEW PHYTOLOGIST (2017)
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko et al.
SCIENCE (2017)
The Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
Xiaohan Yang et al.
NATURE COMMUNICATIONS (2017)
The Dfam database of repetitive DNA families
Robert Hubley et al.
NUCLEIC ACIDS RESEARCH (2016)
Another look at the phylogenetic position of the grape order Vitales: Chloroplast phylogenomics with an expanded sampling of key lineages
Ning Zhang et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
Redundans: an assembly pipeline for highly heterozygous genomes
Leszek P. Pryszcz et al.
NUCLEIC ACIDS RESEARCH (2016)
Into the Evening: Complex Interactions in the Arabidopsis Circadian Clock
He Huang et al.
TRENDS IN GENETICS (2016)
Functional characterization of the late embryogenesis abundant (LEA) protein gene family from Pinus tabuliformis (Pinaceae) in Escherichia coli
Jie Gao et al.
SCIENTIFIC REPORTS (2016)
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand et al.
CELL SYSTEMS (2016)
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
Neva C. Durand et al.
CELL SYSTEMS (2016)
Transcript, protein and metabolite temporal dynamics in the CAM plant Agave
Paul E. Abraham et al.
NATURE PLANTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
The Genome of Dendrobium officinale Illuminates the Biology of the Important Traditional Chinese Orchid Herb
Liang Yan et al.
MOLECULAR PLANT (2015)
De Novo Plant Genome Assembly Based on Chromatin Interactions: A Case Study of Arabidopsis thaliana
Ting Xie et al.
MOLECULAR PLANT (2015)
The pineapple genome and the evolution of CAM photosynthesis
Ray Ming et al.
NATURE GENETICS (2015)
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
Rene L. Warren et al.
PLANT JOURNAL (2015)
The genome sequence of the orchid Phalaenopsis equestris
Jing Cai et al.
NATURE GENETICS (2015)
Expression of Rice CYP450-Like Gene (Os08g01480) in Arabidopsis Modulates Regulatory Network Leading to Heavy Metal and Other Abiotic Stress Tolerance
Arti Rai et al.
PLOS ONE (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Tree immunity: growing old without antibodies
Peri A. Tobias et al.
TRENDS IN PLANT SCIENCE (2014)
Engineering crassulacean acid metabolism to improve water-use efficiency
Anne M. Borland et al.
TRENDS IN PLANT SCIENCE (2014)
An easy SteamDrop method for high quality plant chromosome preparation
Ilya Kirov et al.
MOLECULAR CYTOGENETICS (2014)
Smaller, faster stomata: scaling of stomatal size, rate of response, and stomatal conductance
Paul L. Drake et al.
JOURNAL OF EXPERIMENTAL BOTANY (2013)
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
Mira V. Han et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Yoshihiro Kawahara et al.
RICE (2013)
ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments
Zhang Zhang et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Phytozome: a comparative platform for green plant genomics
David M. Goodstein et al.
NUCLEIC ACIDS RESEARCH (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
Evolution and functional diversification of the small heat shock protein/α-crystallin family in higher plants
Hernan Gabriel Bondino et al.
PLANTA (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
FIMO: scanning for occurrences of a given motif
Charles E. Grant et al.
BIOINFORMATICS (2011)
Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus
Zhiyong Xiong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
ggplot2
Hadley Wickham
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL STATISTICS (2011)
Evolution along the crassulacean acid metabolism continuum
Katia Silvera et al.
FUNCTIONAL PLANT BIOLOGY (2010)
MYB transcription factors in Arabidopsis
Christian Dubos et al.
TRENDS IN PLANT SCIENCE (2010)
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
Dapeng Wang et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2010)
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
Michael Freeling
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
OPINION The evolutionary significance of ancient genome duplications
Yves Van de Peer et al.
NATURE REVIEWS GENETICS (2009)
LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana
Michaela Hundertmark et al.
BMC GENOMICS (2008)
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
Haibao Tang et al.
GENOME RESEARCH (2008)
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
Kousuke Hanada et al.
PLANT PHYSIOLOGY (2008)
Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules
Todd P. Michael et al.
PLOS GENETICS (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
Functional constraints of CAM leaf anatomy: tight cell packing is associated with increased CAM function across a gradient of CAM expression
Elizabeth A. Nelson et al.
JOURNAL OF EXPERIMENTAL BOTANY (2008)
Two new nuclear isolation buffers for plant DNA flow cytometry: A test with 37 species
Joao Loureiro et al.
ANNALS OF BOTANY (2007)
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Olivier Jaillon et al.
NATURE (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
Carene Rizzon et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
Elicitor-mediated oligomerization of the tobacco N disease resistance protein
P Mestre et al.
PLANT CELL (2006)
The effects of stress on plant cuticular waxes
Tom Shepherd et al.
NEW PHYTOLOGIST (2006)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
CD-Search: protein domain annotations on the fly
A Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
T Thiel et al.
THEORETICAL AND APPLIED GENETICS (2003)
Arabidopsis OST1 protein kinase mediates the regulation of stomatal aperture by abscisic acid and acts upstream of reactive oxygen species production
AC Mustilli et al.
PLANT CELL (2002)
Phase-specific circadian clock regulatory elements in Arabidopsis
TP Michael et al.
PLANT PHYSIOLOGY (2002)
Crassulacean acid metabolism 1975-2000, a check list
OH Sayed
PHOTOSYNTHETICA (2001)
Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences
DE Soltis et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2000)