相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Metagenomic and metabolic analyses of poly-extreme microbiome from an active crater volcano lake
Betsy Anaid Pena-Ocana et al.
ENVIRONMENTAL RESEARCH (2022)
Valid publication of the names of forty- two phyla of prokaryotes
Aharon Oren et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2021)
Sensitive protein alignments at tree-of-life scale using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2021)
Presence of Fe(II) and nitrate shapes aquifer-originating communities leading to an autotrophic enrichment dominated by an Fe(II)-oxidizing Gallionellaceae sp.
Natalia Jakus et al.
FEMS MICROBIOLOGY ECOLOGY (2021)
Growth of Iron-Oxidizing Bacteria Gallionella ferruginea and Leptothrix cholodnii in Oligotrophic Environments: Ca, Mg, and C as Limiting Factors and G. ferruginea Necromass as C-Source
Tanja Eggerichs et al.
GEOMICROBIOLOGY JOURNAL (2020)
SQMtools: automated processing and visual analysis of 'omics data with R and anvi'o
Fernando Puente-Sanchez et al.
BMC BIOINFORMATICS (2020)
Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities
David W. Waite et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)
SqueezeMeta, A Highly Portable, Fully Automatic Metagenomic Analysis Pipeline
Javier Tamames et al.
FRONTIERS IN MICROBIOLOGY (2019)
Genomes of Neutrophilic Sulfur-Oxidizing Chemolithoautotrophs Representing 9 Proteobacterial Species From 8 Genera
Tomohiro Watanabe et al.
FRONTIERS IN MICROBIOLOGY (2019)
Genome-resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep-sea hydrothermal vents
David Galambos et al.
ENVIRONMENTAL MICROBIOLOGY (2019)
Fine-Scale Biogeography and the Inference of Ecological Interactions Among Neutrophilic Iron-Oxidizing Zetaproteobacteria as Determined by a Rule-Based Microbial Network
Katherine Duchinski et al.
FRONTIERS IN MICROBIOLOGY (2019)
The Fe(II)-oxidizing Zetaproteobacteria: historical, ecological and genomic perspectives
Sean M. McAllister et al.
FEMS MICROBIOLOGY ECOLOGY (2019)
Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle
Karthik Anantharaman et al.
ISME JOURNAL (2018)
Primary productivity below the seafloor at deep-sea hot springs
Jesse McNichol et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa
Sean M. McAllister et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2018)
Hidden diversity revealed by genome-resolved metagenomics of iron-oxidizing microbial mats from Lo'ihi Seamount, Hawai'i
Heather Fullerton et al.
ISME JOURNAL (2017)
Deciphering Diversity Indices for a Better Understanding of Microbial Communities
Bo-Ra Kim et al.
JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY (2017)
Unraveling RubisCO Form I and Form II Regulation in an Uncultured Organism from a Deep-Sea Hydrothermal Vent via Metagenomic and Mutagenesis Studies
Stefanie Bohnke et al.
FRONTIERS IN MICROBIOLOGY (2017)
Community Structure of Lithotrophically-Driven Hydrothermal Microbial Mats from the Mariana Arc and Back-Arc
Kevin W. Hager et al.
FRONTIERS IN MICROBIOLOGY (2017)
Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
Luisa W. Hugerth et al.
FRONTIERS IN MICROBIOLOGY (2017)
Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
David W. Waite et al.
FRONTIERS IN MICROBIOLOGY (2017)
Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center
Karthik Anantharaman et al.
ISME JOURNAL (2016)
Quantitative PCR Analysis of Functional Genes in Iron-Rich Microbial Mats at an Active Hydrothermal Vent System (L(o)over-bar'ihi Seamount, Hawai'i)
Kelsey J. Jesser et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Complete nitrification by Nitrospira bacteria
Holger Daims et al.
NATURE (2015)
A unique assemblage of cosmopolitan freshwater bacteria and higher community diversity differentiate an urbanized estuary from oligotrophic Lake Michigan
Ryan J. Newton et al.
FRONTIERS IN MICROBIOLOGY (2015)
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi) sulfite reductases
Albert Leopold Mueller et al.
ISME Journal (2015)
Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin
Cody S. Sheik et al.
ISME JOURNAL (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
STAMP: statistical analysis of taxonomic and functional profiles
Donovan H. Parks et al.
BIOINFORMATICS (2014)
The complete genome sequence for putative H2- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome
Kim M. Handley et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
Carbon adsorption onto Fe oxyhydroxide stalks produced by a lithotrophic iron-oxidizing bacteria
S. A. Bennett et al.
GEOBIOLOGY (2014)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
Anna Klindworth et al.
NUCLEIC ACIDS RESEARCH (2013)
Increased Abundance of Gallionella spp., Leptothrix spp. and Total Bacteria in Response to Enhanced Mn and Fe Concentrations in a Disturbed Southern Appalachian High Elevation Wetland
K. W. Johnson et al.
GEOMICROBIOLOGY JOURNAL (2012)
The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs
Ryan A. Lesniewski et al.
ISME JOURNAL (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
Chemoautotrophy at Deep-Sea Vents Past, Present, and Future
Stefan M. Sievert et al.
OCEANOGRAPHY (2012)
Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean
Michael Huegler et al.
ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)
Biodiversity and Emerging Biogeography of the Neutrophilic Iron-Oxidizing Zetaproteobacteria
Sean M. McAllister et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
The iron-oxidizing proteobacteria
Sabrina Hedrich et al.
MICROBIOLOGY-SGM (2011)
Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective
David Emerson et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
MICROBIOLOGY OF SEAMOUNTS Common Patterns Observed in Community Structure
David Emerson et al.
OCEANOGRAPHY (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Redox Speciation and Distribution within Diverse Iron-dominated Microbial Habitats at Loihi Seamount
Brian T. Glazer et al.
GEOMICROBIOLOGY JOURNAL (2009)
Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance
Satoshi Nakagawa et al.
FEMS MICROBIOLOGY ECOLOGY (2008)
Extreme spatial and temporal variability of hydrothermal microbial mat communities along the Mariana Island Arc and southern Mariana back-arc system
Richard E. Davis et al.
JOURNAL OF GEOPHYSICAL RESEARCH-SOLID EARTH (2008)
Distinct form I, II, III, and IV Rubisco proteins from the three kingdoms of life provide clues about Rubisco evolution and structure/function relationships
F. Robert Tabita et al.
JOURNAL OF EXPERIMENTAL BOTANY (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
A Novel Lineage of Proteobacteria Involved in Formation of Marine Fe-Oxidizing Microbial Mat Communities
David Emerson et al.
PLOS ONE (2007)
Bacterioplankton communities of Crater Lake, OR: dynamic changes with euphotic zone food web structure and stable deep water populations
Ena Urbach et al.
HYDROBIOLOGIA (2007)
Nutrient limitation in Crater Lake, Oregon
Alan W. Groeger
HYDROBIOLOGIA (2007)
Neutrophilic Fe-Oxidizing bacteria are abundant at the Loihi Seamount hydrothermal vents and play a major role in Fe oxide deposition
D Emerson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake
E Urbach et al.
LIMNOLOGY AND OCEANOGRAPHY (2001)
Sulphate reduction and sulphur cycling in lake sediments: a review
M Holmer et al.
FRESHWATER BIOLOGY (2001)
Molecular phylogeny: Applications and implications for marine microbiology
CL Moyer
METHODS IN MICROBIOLOGY, VOL 30 (2001)
分享论文
