4.6 Article

A bipartite, low-affinity roadblock domain-containing GAP complex regulates bacteria front-rear polarity

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

ColabFold: making protein folding accessible to all

Milot Mirdita et al.

Summary: ColabFold combines fast homology search and optimized model utilization to offer accelerated prediction of protein structures and complexes, with a processing speed that is 40-60 times faster. It serves as a free and accessible platform for protein folding, capable of predicting close to 1,000 structures per day.

NATURE METHODS (2022)

Article Multidisciplinary Sciences

Expanded diversity of Asgard archaea and their relationships with eukaryotes

Yang Liu et al.

Summary: Research on Asgard archaea suggests that the origin of eukaryotes may be within or outside Asgard, with phylogenomic analysis unable to provide a clear answer. The study introduces six new phyla and demonstrates an expansion of eukaryotic signature proteins, indicating a dynamic evolutionary process.

NATURE (2021)

Article Multidisciplinary Sciences

Highly accurate protein structure prediction with AlphaFold

John Jumper et al.

Summary: Proteins are essential for life, and accurate prediction of their structures is a crucial research problem. Current experimental methods are time-consuming, highlighting the need for accurate computational approaches to address the gap in structural coverage. Despite recent progress, existing methods fall short of atomic accuracy in protein structure prediction.

NATURE (2021)

Article Genetics & Heredity

Protein-protein interaction network controlling establishment and maintenance of switchable cell polarity

Luis Antonio Menezes Carreira et al.

PLOS GENETICS (2020)

Article Multidisciplinary Sciences

The small GTPase MgIA together with the TPR domain protein SgmX stimulates type IV pili formation in M. xanthus

Anna Potapova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

The polar Ras-like GTPase MglA activates type IV pilus via SgmX to enable twitching motility in Myxococcus xanthus

Romain Mercier et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Biochemical Research Methods

HH-suite3 for fast remote homology detection and deep protein annotation

Martin Steinegger et al.

BMC BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

Cryo-EM Structure of the Human FLCN-FNIP2-Rag-Ragulator Complex

Kuang Shen et al.

Article Multidisciplinary Sciences

Structural mechanism of a Rag GTPase activation checkpoint by the lysosomal folliculin complex

Rosalie E. Lawrence et al.

SCIENCE (2019)

Article Multidisciplinary Sciences

MglA functions as a three-state GTPase to control movement reversals of Myxococcus xanthus

Christian Galicia et al.

NATURE COMMUNICATIONS (2019)

Article Biochemical Research Methods

MMseqs2 desktop and local web server app for fast, interactive sequence searches

Milot Mirdita et al.

BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

20 years of the SMART protein domain annotation resource

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Biochemistry & Molecular Biology

Subcellular Organization: A Critical Feature of Bacterial Cell Replication

Ivan V. Surovtsev et al.

Article Multidisciplinary Sciences

Architecture of the human GATOR1 and GATOR1-Rag GTPases complexes

Kuang Shen et al.

NATURE (2018)

Article Biochemistry & Molecular Biology

Hybrid Structure of the RagA/C-Ragulator mTORC1 Activation Complex

Ming-Yuan Su et al.

MOLECULAR CELL (2017)

Article Multidisciplinary Sciences

Crystal structure of the human lysosomal mTORC1 scaffold complex and its impact on signaling

Mariana E. G. de Araujo et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

Structural basis for Ragulator functioning as a scaffold in membrane-anchoring of Rag GTPases and mTORC1

Tianlong Zhang et al.

NATURE COMMUNICATIONS (2017)

Article Biochemistry & Molecular Biology

Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis

Ahmad Paintdakhi et al.

MOLECULAR MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks

Christen M. Klinger et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Cell Biology

The small G-protein MglA connects to the MreB actin cytoskeleton at bacterial focal adhesions

Anke Treuner-Lange et al.

JOURNAL OF CELL BIOLOGY (2015)

Article Multidisciplinary Sciences

Complex archaea that bridge the gap between prokaryotes and eukaryotes

Anja Spang et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

The EMBL-EBI bioinformatics web and programmatic tools framework

Weizhong Li et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Evolutionary Biology

Evolution and Diversity of the Ras Superfamily of Small GTPases in Prokaryotes

Kristin Wuichet et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Review Cell Biology

Regulation of cell polarity in bacteria

Anke Treuner-Lange et al.

JOURNAL OF CELL BIOLOGY (2014)

Review Physiology

REGULATION OF SMALL GTPases BY GEFs, GAPs, AND GDIs

Jacqueline Cherfils et al.

PHYSIOLOGICAL REVIEWS (2013)

Review Cell Biology

Beyond symmetry-breaking: competition and negative feedback in GTPase regulation

Chi-Fang Wu et al.

TRENDS IN CELL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Ragulator Is a GEF for the Rag GTPases that Signal Amino Acid Levels tomTORC1

Liron Bar-Peled et al.

Article Biochemical Research Methods

NIH Image to ImageJ: 25 years of image analysis

Caroline A. Schneider et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

The Mon1-Ccz1 Complex Is the GEF of the Late Endosomal Rab7 Homolog Ypt7

Mirjana Nordmann et al.

CURRENT BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Bacterial motility complexes require the actin-like protein, MreB and the Ras homologue, MglA

Emilia M. F. Mauriello et al.

EMBO JOURNAL (2010)

Article Biochemistry & Molecular Biology

Regulation of dynamic polarity switching in bacteria by a Ras-like G-protein and its cognate GAP

Simone Leonardy et al.

EMBO JOURNAL (2010)

Article Biochemistry & Molecular Biology

Molecular architecture of the TRAPPII complex and implications for vesicle tethering

Calvin K. Yip et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Regulation of the type IV pili molecular machine by dynamic localization of two motor proteins

Iryna Bulyha et al.

MOLECULAR MICROBIOLOGY (2009)

Review Cell Biology

Building the cell: design principles of cellular architecture

Susanne M. Rafelski et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2008)

Review Biochemistry & Molecular Biology

GEFs and GAPs: Critical elements in the control of small G proteins

Johannes L. Bos et al.

Article Multidisciplinary Sciences

Evidence that focal adhesion complexes power bacterial gliding motility

Tam Mignot et al.

SCIENCE (2007)

Review Multidisciplinary Sciences

Cell migration: Integrating signals from front to back

AJ Ridley et al.

SCIENCE (2003)

Review Multidisciplinary Sciences

Rho GTPases in cell biology

S Etienne-Manneville et al.

NATURE (2002)

Review Multidisciplinary Sciences

Signal transduction - The guanine nucleotide-binding switch in three dimensions

IR Vetter et al.

SCIENCE (2001)

Article Multidisciplinary Sciences

Direct observation of extension and retraction of type IV pili

JM Skerker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Multidisciplinary Sciences

Pilus retraction powers bacterial twitching motility

AJ Merz et al.

NATURE (2000)