相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
Mihaly Varadi et al.
NUCLEIC ACIDS RESEARCH (2022)
UniProt: the universal protein knowledgebase in 2021
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2021)
Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation
Elena Tea Russo et al.
BMC BIOINFORMATICS (2021)
Sensitive protein alignments at tree-of-life scale using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
Pfam: The protein families database in 2021
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2021)
Disentangling the complexity of low complexity proteins
Pablo Mier et al.
BRIEFINGS IN BIOINFORMATICS (2020)
CDD/SPARCLE: the conserved domain database in 2020
Shennan Lu et al.
NUCLEIC ACIDS RESEARCH (2020)
DeepCoil-a fast and accurate prediction of coiled-coil domains in protein sequences
Jan Ludwiczak et al.
BIOINFORMATICS (2019)
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
Alex L. Mitchell et al.
NUCLEIC ACIDS RESEARCH (2019)
20 years of the SMART protein domain annotation resource
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2018)
IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding
Balint Meszaros et al.
NUCLEIC ACIDS RESEARCH (2018)
RiCRN1, a Crinkler Effector From the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis, Functions in Arbuscule Development
Stefanie Voss et al.
FRONTIERS IN MICROBIOLOGY (2018)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
Martin Steinegger et al.
NATURE BIOTECHNOLOGY (2017)
Manual classification strategies in the ECOD database
Hua Cheng et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)
The Structure-Function Linkage Database
Eyal Akiva et al.
NUCLEIC ACIDS RESEARCH (2014)
Clustering by fast search and find of density peaks
Alex Rodriguez et al.
SCIENCE (2014)
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2013)
The challenge of increasing Pfam coverage of the human proteome
Jaina Mistry et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2013)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Close encounters of the third kind: disordered domains and the interactions of proteins
Peter Tompa et al.
BIOESSAYS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function
Marco Punta et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
EVEREST: automatic identification and classification of protein domains in all protein sequences
Elon Portugaly et al.
BMC BIOINFORMATICS (2006)
Intrinsically unstructured proteins and their functions
HJ Dyson et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
A combined transmembrane topology and signal peptide prediction method
L Käll et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Exhaustive enumeration of protein domain families
A Heger et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
Protein family and fold occurrence in genomes: Power-law behaviour and evolutionary model
J Qian et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
