4.5 Review

Self-Assembly of Linear, Natural Antimicrobial Peptides: An Evolutionary Perspective

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Chemistry, Multidisciplinary

Secondary Structure Transitions for a Family of Amyloidogenic, Antimicrobial Uperin 3 Peptides in Contact with Sodium Dodecyl Sulfate

Anup K. Prasad et al.

Summary: This study investigates the structural changes of antimicrobial and amyloidogenic peptides in the presence of a membrane mimetic surfactant, sodium dodecyl sulfate (SDS). The results show that the peptides display increased stability and a tendency towards alpha-helical structures in the presence of SDS.

CHEMPLUSCHEM (2022)

Article Biochemistry & Molecular Biology

Temporin B Forms Hetero-Oligomers with Temporin L, Modifies Its Membrane Activity, and Increases the Cooperativity of Its Antibacterial Pharmacodynamic Profile

Philip M. Ferguson et al.

Summary: The pharmacodynamic profile and in vivo synergy of antimicrobial peptides (AMPs) play important roles in limiting resistance evolution and ensuring their conservation. Research has shown that the antibacterial potency of temporin L can be synergistically increased when combined with temporins B and A. This synergistic effect may be due to altered interaction with the bacterial plasma membrane. Furthermore, the addition of buforin II can further enhance the cooperativity between temporins B and L. Understanding the mechanism of synergy between AMPs from the same organism can lead to the development of antibiotic combinations with advantageous pharmacodynamic properties.

BIOCHEMISTRY (2022)

Article Biochemistry & Molecular Biology

The evolution of the antimicrobial peptide database over 18 years: Milestones and new features

Guangshun Wang et al.

Summary: The antimicrobial peptide database (APD) has been serving the field of antimicrobial peptides for 18 years, documenting database milestones and key events that have shaped its current form. This article compares peptide statistics from 2010 to 2020 and introduces new additions to the database. The APD also includes antimicrobial peptides from host microbiota, which play a crucial role in shaping immune systems and may be linked to various human diseases.

PROTEIN SCIENCE (2022)

Article Multidisciplinary Sciences

The Cryo-EM structures of two amphibian antimicrobial cross-β amyloid fibrils

Robert Bucker et al.

Summary: This study identified the fibril structure of two amphibian AMPs using cryogenic electron microscopy, revealing propeller-like and kinked cross-beta fibrils similar to human functional amyloids.

NATURE COMMUNICATIONS (2022)

Review Mathematical & Computational Biology

A review on antimicrobial peptides databases and the computational tools

Shahin Ramazi et al.

Summary: Antimicrobial Peptides (AMPs) are natural peptides that play a crucial role in the immune system and have the potential to be used as alternative infection therapeutics. They have short lengths and are effective against microbes, with low toxicity in mammals. Computational methods have advanced the study of AMPs and provided valuable resources for designing new models for AMP prediction. However, more research is needed to accurately evaluate and analyze these computational methods.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2022)

Article Multidisciplinary Sciences

The amphibian antimicrobial peptide uperin 3.5 is a cross-α/cross-β chameleon functional amyloid

Nir Salinas et al.

Summary: The study found that two subtypes of antimicrobial peptide uperin 3.5 can form functional amyloid fibrils, which has important physiological implications. Uperin 3.5 mainly forms cross-beta fibrils in the absence of lipids, but helical fibril formation is induced by bacterial cells or membrane mimetics, leading to membrane damage and cell death.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Review Chemistry, Multidisciplinary

Antimicrobial Peptides and Proteins: From Nature's Reservoir to the Laboratory and Beyond

Tanumoy Sarkar et al.

Summary: The rapid rise of antimicrobial resistance, the slowdown in the development of new antibiotics, and the resurgence of multidrug resistant microbes highlight the urgent need for alternative therapeutic molecules like antimicrobial peptides. These peptides, found in nature, have been effective in defending against microbial infections for a long time. Compared to conventional antibiotics, microbes develop resistance to antimicrobial peptides at a slower rate, making them potential alternative therapeutics of the future.

FRONTIERS IN CHEMISTRY (2021)

Article Biochemistry & Molecular Biology

Staphylococcus aureus PSMα3 Cross-α Fibril Polymorphism and Determinants of Cytotoxicity

Einav Tayeb-Fligelman et al.

STRUCTURE (2020)

Article Biochemistry & Molecular Biology

Proteomic Screening for Prediction and Design of Antimicrobial Peptides with AmpGram

Michal Burdukiewicz et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Multidisciplinary Sciences

The Human LL-37(17-29) antimicrobial peptide reveals a functional supramolecular structure

Yizhaq Engelberg et al.

NATURE COMMUNICATIONS (2020)

Article Immunology

The Reversible Non-covalent Aggregation Into Fibers of PGLa and Magainin 2 Preserves Their Antimicrobial Activity and Synergism

Dennis Wilkens Juhl et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2020)

Review Engineering, Biomedical

Mode-of-Action of Antimicrobial Peptides: Membrane Disruption vs. Intracellular Mechanisms

Aurelie H. Benfield et al.

FRONTIERS IN MEDICAL TECHNOLOGY (2020)

Article Biochemistry & Molecular Biology

Mechanistic insight into the early stages of amyloid formation using an anuran peptide

Sourav Ray et al.

PEPTIDE SCIENCE (2019)

Article Multidisciplinary Sciences

Extreme amyloid polymorphism in Staphylococcus aureus virulent PSMα peptides

Nir Salinas et al.

NATURE COMMUNICATIONS (2018)

Article Clinical Neurology

The antimicrobial protection hypothesis of Alzheimer's disease

Robert D. Moir et al.

ALZHEIMERS & DEMENTIA (2018)

Article Biochemistry & Molecular Biology

Amyloid nomenclature 2018: recommendations by the International Society of Amyloidosis (ISA) nomenclature committee

Merrill D. Benson et al.

AMYLOID-JOURNAL OF PROTEIN FOLDING DISORDERS (2018)

Review Chemistry, Physical

Influence of self-assembly on the performance of antimicrobial peptides

Sara Malekkhaiat Haffner et al.

CURRENT OPINION IN COLLOID & INTERFACE SCIENCE (2018)

Article Biochemistry & Molecular Biology

Amyloid aggregation and membrane activity of the antimicrobial peptide uperin 3.5

Lisandra L. Martin et al.

PEPTIDE SCIENCE (2018)

Review Biochemistry & Molecular Biology

Convergent evolution of defensin sequence, structure and function

Thomas M. A. Shafee et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2017)

Article Chemistry, Physical

High-Resolution Insights into the Stepwise Self-Assembly of Nanofiber from Bioactive Peptides

Fude Sun et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2017)

Article Multidisciplinary Sciences

The cytotoxic Staphylococcus aureus PSMαa3 reveals a cross-α amyloid-like fibril

Einav Tayeb-Fligelman et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

A novel secretion and online-cleavage strategy for production of cecropin A in Escherichia coli

Meng Wang et al.

SCIENTIFIC REPORTS (2017)

Article Multidisciplinary Sciences

Amyloidogenic motifs revealed by n-gram analysis

Michal Burdukiewicz et al.

SCIENTIFIC REPORTS (2017)

Review Chemistry, Multidisciplinary

Small Bioactive Peptides for Biomaterials Design and Therapeutics

I. W. Hamley

CHEMICAL REVIEWS (2017)

Article Biochemistry & Molecular Biology

The Amyloid Fibril-Forming Properties of the Amphibian Antimicrobial Peptide Uperin3.5

Antonio N. Calabrese et al.

CHEMBIOCHEM (2016)

Article Biochemistry & Molecular Biology

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides

Faiza Hanif Waghu et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

APD3: the antimicrobial peptide database as a tool for research and education

Guangshun Wang et al.

NUCLEIC ACIDS RESEARCH (2016)

Editorial Material Biochemistry & Molecular Biology

Antimicrobial peptides

Ling-juan Zhang et al.

CURRENT BIOLOGY (2016)

Review Medicine, General & Internal

The Role of Amyloid-β Oligomers in Toxicity, Propagation, and Immunotherapy

Urmi Sengupta et al.

EBIOMEDICINE (2016)

Article Biochemistry & Molecular Biology

Role of peptide self-assembly in antimicrobial peptides

Xibo Tian et al.

JOURNAL OF PEPTIDE SCIENCE (2015)

Review Biochemistry & Molecular Biology

The diversity and evolution of anuran skin peptides

Enrico Koenig et al.

PEPTIDES (2015)

Article Multidisciplinary Sciences

Cytotoxic Helix-Rich Oligomer Formation by Melittin and Pancreatic Polypeptide

Pradeep K. Singh et al.

PLOS ONE (2015)

Review Biochemistry & Molecular Biology

Screening for Amyloid Aggregation: In-Silico, In-Vitro and In-Vivo Detection

Anna Villar-Pique et al.

CURRENT PROTEIN & PEPTIDE SCIENCE (2014)

Review Biochemistry & Molecular Biology

Self-assembling amphiphilic peptides

Ashkan Dehsorkhi et al.

JOURNAL OF PEPTIDE SCIENCE (2014)

Article Biochemistry & Molecular Biology

Oligomeric structure of a cathelicidin antimicrobial peptide in dodecylphosphocholine micelle determined by NMR spectroscopy

Rathi Saravanan et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2011)

Review Biotechnology & Applied Microbiology

The expanding scope of antimicrobial peptide structures and their modes of action

Leonard T. Nguyen et al.

TRENDS IN BIOTECHNOLOGY (2011)

Review Biochemistry & Molecular Biology

Self-Assembly of Peptide Amphiphiles: From Molecules to Nanostructures to Biomaterials

Honggang Cui et al.

BIOPOLYMERS (2010)

Article Multidisciplinary Sciences

The Alzheimer's Disease-Associated Amyloid β-Protein Is an Antimicrobial Peptide

Stephanie J. Soscia et al.

PLOS ONE (2010)

Review Biochemistry & Molecular Biology

Binding of amphipathic α-helical antimicrobial peptides to lipid membranes: Lessons from temporins B and L

Ajay K. Mahalka et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2009)

Review Biochemistry & Molecular Biology

Buforins: Histone H2A-derived antimicrobial peptides from toad stomach

Ju Hyun Cho et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2009)

Article Biochemistry & Molecular Biology

APD2: the updated antimicrobial peptide database and its application in peptide design

Guangshun Wang et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Binding of LL-37 to model biomembranes:: Insight into target vs host cell recognition

Rohit Sood et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2008)

Article Biochemistry & Molecular Biology

Structural requirements for antimicrobial versus chemoattractant activities for dermaseptin S9

Constance Auvynet et al.

FEBS JOURNAL (2008)

Article Biochemical Research Methods

Fluorescent temporin B derivative and its binding to liposomes

Rohit Sood et al.

JOURNAL OF FLUORESCENCE (2007)

Article Biochemistry & Molecular Biology

Interaction of the antimicrobial peptide pheromone Plantaricin A with model membranes: Implications for a novel mechanism of action

Hongxla Zhao et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2006)

Article Dermatology

Antimicrobial peptides

A Izadpanah et al.

JOURNAL OF THE AMERICAN ACADEMY OF DERMATOLOGY (2005)

Article Biochemistry & Molecular Biology

Membrane translocation mechanism of the antimicrobial peptide buforin 2

S Kobayashi et al.

BIOCHEMISTRY (2004)

Review Multidisciplinary Sciences

Protein folding and misfolding

CM Dobson

NATURE (2003)

Article Biochemistry & Molecular Biology

Interaction of antimicrobial peptides from Australian amphibians with lipid membranes

I Marcotte et al.

CHEMISTRY AND PHYSICS OF LIPIDS (2003)

Article Biochemistry & Molecular Biology

Roles of diversifying selection and coordinated evolution in the evolution of amphibian antimicrobial peptides

TF Duda et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Biochemistry & Molecular Biology

Structure-function relationships of temporins, small antimicrobialpeptides from amphibian skin

ML Mangoni et al.

EUROPEAN JOURNAL OF BIOCHEMISTRY (2000)