4.5 Article

In silico analysis and a comparative genomics approach to predict pathogenic trehalase genes in the complete genome of Antarctica Shigella sp. PAMC28760

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Genetics & Heredity

Prediction of trehalose-metabolic pathway and comparative analysis of KEGG, MetaCyc, and RAST databases based on complete genome of Variovorax sp. PAMC28711

Prasansah Shrestha et al.

Summary: The study highlights the importance of thorough investigation before proceeding with work, utilizing bioinformatics tools and online databases, and specifically comparing the accuracy of databases such as KEGG and MetaCyc for a given microbial pathway. Such studies can contribute to the future improvement of bioinformatics tools to overcome limitations.

BMC GENOMIC DATA (2022)

Article Biochemistry & Molecular Biology

Database resources of the National Center for Biotechnology Information

Eric W. Sayers et al.

Summary: The National Center for Biotechnology Information (NCBI) offers a wide range of online resources for biological information and data, including GenBank (R) nucleic acid sequence database and PubMed (R) database of citations and abstracts. Entrez system allows search and retrieval operations for most of these data, with E-utilities serving as the programming interface. Additional resources such as PMC, Bookshelf, Genome Data Viewer, SRA, ClinVar, dbSNP, dbVar, Pathogen Detection, BLAST, Primer-BLAST, IgBLAST, iCn3D, and PubChem are also accessible through the NCBI home page.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

The MetaCyc database of metabolic pathways and enzymes - a 2019 update

Ron Caspi et al.

NUCLEIC ACIDS RESEARCH (2020)

Review Biotechnology & Applied Microbiology

Diverse and common features of trehalases and their contributions to microbial trehalose metabolism

Masayoshi Sakaguchi

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2020)

Article Biochemical Research Methods

Discrimination between pathogenic and non-pathogenic E. coli strains by means of Raman microspectroscopy

Bjoern Lorenz et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2020)

Review Chemistry, Multidisciplinary

The role of chemoenzymatic synthesis in advancing trehalose analogues as tools for combatting bacterial pathogens

Karishma Kalera et al.

CHEMICAL COMMUNICATIONS (2020)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

Duplication and diversification of trehalase confers evolutionary advantages on lepidopteran insects

Yanyan Zhou et al.

MOLECULAR ECOLOGY (2019)

Article Chemistry, Multidisciplinary

Degradation-resistant trehalose analogues block utilization of trehalose by hypervirulent Clostridioides difficile

Noah D. Danielson et al.

CHEMICAL COMMUNICATIONS (2019)

Article Biochemistry & Molecular Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Review Biotechnology & Applied Microbiology

Update on: Shigella new serogroups/serotypes and their antimicrobial resistance

D. P. Muthuirulandi Sethuvel et al.

LETTERS IN APPLIED MICROBIOLOGY (2017)

Editorial Material Immunology

Trehalose pathway as an antifungal target

John R. Perfect et al.

VIRULENCE (2017)

Letter Immunology

Trehalose as antifungal target: The picture is still incomplete

Juan-Carlos Arguelles

VIRULENCE (2017)

Article Microbiology

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

Seok-Hwan Yoon et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)

Review Biochemistry & Molecular Biology

Yeast trehalases: Two enzymes, one catalytic mission

Sergi Maicas et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2016)

Article Microbiology

OrthoANI: An improved algorithm and software for calculating average nucleotide identity

Imchang Lee et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)

Article Chemistry, Applied

Microbiological risk assessment for personal care products

S. E. Stewart et al.

INTERNATIONAL JOURNAL OF COSMETIC SCIENCE (2016)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

The carbohydrate-active enzymes database (CAZy) in 2013

Vincent Lombard et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Gastroenterology & Hepatology

Temperature-regulated expression of outer membrane proteins in Shigella flexneri

Hemavathy Harikrishnan et al.

GUT PATHOGENS (2013)

Article Biochemistry & Molecular Biology

Trehalases A neglected carbon metabolism regulator?

Aaron Barraza et al.

PLANT SIGNALING & BEHAVIOR (2013)

Article Microbiology

Proteomic Analysis of the Effect of Cyanide on Klebsiella oxytoca

Petrus Tang et al.

CURRENT MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Article Biochemistry & Molecular Biology

The CGView Server: a comparative genomics tool for circular genomes

Jason R. Grant et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Environmental Sciences

Environmental contamination in Antarctic ecosystems

R. Bargagli

SCIENCE OF THE TOTAL ENVIRONMENT (2008)

Review Microbiology

Clinical trials of Shigella vaccines:: two steps forward and one step back on a long, hard road

Myron M. Levine et al.

NATURE REVIEWS MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

A novel trehalase from Mycobacterium smegmatis -: purification, properties, requirements

J. David Carroll et al.

FEBS JOURNAL (2007)

Review Food Science & Technology

Shigella as a foodborne pathogen and current methods for detection in food

B. R. Warren et al.

CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2006)

Article Biochemistry & Molecular Biology

Osmo-regulation of bacterial transcription via poised RNA polymerase

SJ Lee et al.

MOLECULAR CELL (2004)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

RC Edgar

BMC BIOINFORMATICS (2004)

Article Multidisciplinary Sciences

Prospects for inferring very large phylogenies by using the neighbor-joining method

K Tamura et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Determinants of translocation and folding of TreF, a trehalase of Escherichia coli

K Uhland et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)