相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Mutation-Simulator: fine-grained simulation of random mutations in any genome
M. A. Kuehl et al.
BIOINFORMATICS (2021)
Genome-scale target capture of mitochondrial and nuclear environmental DNA from water samples
Mads Reinholdt Jensen et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Late Quaternary dynamics of Arctic biota from ancient environmental genomics
Yucheng Wang et al.
NATURE (2021)
Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures
Karen L. Bell et al.
ECOLOGY AND EVOLUTION (2021)
Environmental genomics of Late Pleistocene black bears and giant short-faced bears
Mikkel Winther Pedersen et al.
CURRENT BIOLOGY (2021)
Metagenomics: A viable tool for reconstructing herbivore diet
Physilia Y. S. Chua et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Sensitive protein alignments at tree-of-life scale using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2021)
Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments
Benjamin Vernot et al.
SCIENCE (2021)
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Francesco Beghini et al.
ELIFE (2021)
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
Fatemeh Almodaresi et al.
BIOINFORMATICS (2021)
PIA: More Accurate Taxonomic Assignment of Metagenomic Data Demonstrated on sedaDNA From the North Sea
Becky Cribdon et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2020)
Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank
Martin Steinegger et al.
GENOME BIOLOGY (2020)
Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA
Krista M. Ruppert et al.
GLOBAL ECOLOGY AND CONSERVATION (2019)
A review on the applications and recent advances in environmental DNA (eDNA) metagenomics
Deviram Garlapati et al.
REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
Metagenomic sequencing of environmental DNA reveals marine faunal assemblages from the West Antarctic Peninsula
Dominique A. Cowart et al.
MARINE GENOMICS (2018)
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
F. P. Breitwieser et al.
GENOME BIOLOGY (2018)
gargammel: a sequence simulator for ancient DNA
Gabriel Renaud et al.
BIOINFORMATICS (2017)
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
Kristy Deiner et al.
MOLECULAR ECOLOGY (2017)
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
Zuguang Gu et al.
BIOINFORMATICS (2016)
Postglacial viability and colonization in North America's ice-free corridor
Mikkel W. Pedersen et al.
NATURE (2016)
Fast and sensitive taxonomic classification for metagenomics with Kaiju
Peter Menzel et al.
NATURE COMMUNICATIONS (2016)
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
Daniel H. Huson et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Environmental DNA - An emerging tool in conservation for monitoring past and present biodiversity
Philip Francis Thomsen et al.
BIOLOGICAL CONSERVATION (2015)
Genome sequence of a 45,000-year-old modern human from western Siberia
Qiaomei Fu et al.
NATURE (2014)
Wildlife health investigations: needs, challenges and recommendations
Marie-Pierre Ryser-Degiorgis
BMC VETERINARY RESEARCH (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
分享论文
