相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。ColabFold: making protein folding accessible to all
Milot Mirdita et al.
NATURE METHODS (2022)
Generation of Antibodies Targeting Cleavable Cross-Linkers
Jasjot Singh et al.
ANALYTICAL CHEMISTRY (2021)
Gene expression with corresponding pathways analysis in Gaucher disease
Lukasz Pawlinski et al.
EXPERIMENTAL AND MOLECULAR PATHOLOGY (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
A proximity-dependent biotinylation map of a human cell
Christopher D. Go et al.
NATURE (2021)
A proteomic view on lysosomes
Pathma Muthukottiappan et al.
MOLECULAR OMICS (2021)
Lysosomes as dynamic regulators of cell and organismal homeostasis
Andrea Ballabio et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2020)
Systematic Comparison of Strategies for the Enrichment of Lysosomes by Data Independent Acquisition
Jasjot Singh et al.
JOURNAL OF PROTEOME RESEARCH (2020)
mTOR at the nexus of nutrition, growth, ageing and disease
Grace Y. Liu et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2020)
Flotillins: At the Intersection of Protein S-Palmitoylation and Lipid-Mediated Signaling
Katarzyna Kwiatkowska et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)
How paired PSII-LHCII supercomplexes mediate the stacking of plant thylakoid membranes unveiled by structural mass-spectrometry
Pascal Albanese et al.
NATURE COMMUNICATIONS (2020)
The Lysosome at the Intersection of Cellular Growth and Destruction
Hijai R. Shin et al.
DEVELOPMENTAL CELL (2020)
In-cell architecture of an actively transcribing-translating expressome
Francis J. O'Reilly et al.
SCIENCE (2020)
Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly
Longfei Wang et al.
MOLECULAR CELL (2020)
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains
Christian Haenig et al.
CELL REPORTS (2020)
Optimized Fragmentation Improves the Identification of Peptides Cross-Linked by MS-Cleavable Reagents
Christian E. Stieger et al.
JOURNAL OF PROTEOME RESEARCH (2019)
EGFR is required for Wnt9a-Fzd9b signalling specificity in haematopoietic stem cells
Stephanie Grainger et al.
NATURE CELL BIOLOGY (2019)
Flotillin-mediated endocytosis and ALIX-syntenin-1-mediated exocytosis protect the cell membrane from damage caused by necroptosis
Weiliang Fan et al.
SCIENCE SIGNALING (2019)
RNA Granules Hitchhike on Lysosomes for Long-Distance Transport, Using Annexin A11 as a Molecular Tether
Ya-Cheng Liao et al.
CELL (2019)
Phagolysosome resolution requires contacts with the endoplasmic reticulum and phosphatidylinositol-4-phosphate signalling
Roni Levin-Konigsberg et al.
NATURE CELL BIOLOGY (2019)
Cellular Interactome Dynamics during Paclitaxel Treatment
Juan D. Chavez et al.
CELL REPORTS (2019)
TopoLink: evaluation of structural models using chemical crosslinking distance constraints
Allan J. R. Ferrari et al.
BIOINFORMATICS (2019)
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2019)
Rheb localized on the Golgi membrane activates lysosome-localized mTORC1 at the Golgi-lysosome contact site
Feike Hao et al.
JOURNAL OF CELL SCIENCE (2018)
Development of Large-scale Cross-linking Mass Spectrometry
Helena Maria Barysz et al.
MOLECULAR & CELLULAR PROTEOMICS (2018)
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
Lukas Zimmermann et al.
JOURNAL OF MOLECULAR BIOLOGY (2018)
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Domenico Fasci et al.
MOLECULAR & CELLULAR PROTEOMICS (2018)
Mitochondria-lysosome contacts regulate mitochondrial fission via RAB7 GTP hydrolysis
Yvette C. Wong et al.
NATURE (2018)
SWISS-MODEL: homology modelling of protein structures and complexes
Andrew Waterhouse et al.
NUCLEIC ACIDS RESEARCH (2018)
Triggered recruitment of ESCRT machinery promotes endolysosomal repair
Michael L. Skowyra et al.
SCIENCE (2018)
Mechanisms of lysosomal positioning and movement
Birol Cabukusta et al.
TRAFFIC (2018)
Efficient and robust proteome-wide approaches for cross-linking mass spectrometry
Oleg Klykov et al.
NATURE PROTOCOLS (2018)
Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology
Francis J. O'Reilly et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology
Clinton Yu et al.
ANALYTICAL CHEMISTRY (2018)
Systematic Evaluation of Protein Reduction and Alkylation Reveals Massive Unspecific Side Effects by Iodine-containing Reagents
Torsten Mueller et al.
MOLECULAR & CELLULAR PROTEOMICS (2017)
Hybrid Structure of the RagA/C-Ragulator mTORC1 Activation Complex
Ming-Yuan Su et al.
MOLECULAR CELL (2017)
Capturing protein communities by structural proteomics in a thermophilic eukaryote
Panagiotis L. Kastritis et al.
MOLECULAR SYSTEMS BIOLOGY (2017)
Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry
Devin K. Schweppe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Crystal structure of the human lysosomal mTORC1 scaffold complex and its impact on signaling
Mariana E. G. de Araujo et al.
SCIENCE (2017)
Structural basis for Ragulator functioning as a scaffold in membrane-anchoring of Rag GTPases and mTORC1
Tianlong Zhang et al.
NATURE COMMUNICATIONS (2017)
In situ click chemistry generation of cyclooxygenase-2 inhibitors
Atul Bhardwaj et al.
NATURE COMMUNICATIONS (2017)
A novel approach to analyze lysosomal dysfunctions through subcellular proteomics and lipidomics: the case of NPC1 deficiency
Arun Kumar Tharkeshwar et al.
SCIENTIFIC REPORTS (2017)
Brain Disorders Due to Lysosomal Dysfunction
Alessandro Fraldi et al.
ANNUAL REVIEW OF NEUROSCIENCE, VOL 39 (2016)
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
G. C. P. van Zundert et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Adhesion G protein-coupled receptors in nervous system development and disease
Tobias Langenhan et al.
NATURE REVIEWS NEUROSCIENCE (2016)
Protein purification and crystallization artifacts: The tale usually not told
Ewa Niedzialkowska et al.
PROTEIN SCIENCE (2016)
High-precision iRT prediction in the targeted analysis of data-independent acquisition and its impact on identification and quantitation
Roland Bruderer et al.
PROTEOMICS (2016)
Filling the Void: Proximity-Based Labeling of Proteins in Living Cells
Dae In Kim et al.
TRENDS IN CELL BIOLOGY (2016)
Super Resolution Fluorescence Microscopy and Tracking of Bacterial Flotillin (Reggie) Paralogs Provide Evidence for Defined-Sized Protein Microdomains within the Bacterial Membrane but Absence of Clusters Containing Detergent-Resistant Proteins
Felix Dempwolff et al.
PLOS GENETICS (2016)
Global, quantitative and dynamic mapping of protein subcellular localization
Daniel N. Itzhak et al.
ELIFE (2016)
Cholesterol Transport through Lysosome-Peroxisome Membrane Contacts
Bei-Bei Chu et al.
CELL (2015)
Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry
Fan Liu et al.
NATURE METHODS (2015)
PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
Peter V. Hornbeck et al.
NUCLEIC ACIDS RESEARCH (2015)
Dissecting the Molecular Properties of Prokaryotic Flotillins
Juri Nino Bach et al.
PLOS ONE (2015)
The vacuolar-type H+-ATPase at a glance - more than a proton pump
Michelle E. Maxson et al.
JOURNAL OF CELL SCIENCE (2014)
Endocytic Trafficking of Membrane-Bound Cargo: A Flotillin Point of View
Melanie Meister et al.
MEMBRANES (2014)
Exome Sequencing Identifies GNB4 Mutations as a Cause of Dominant Intermediate Charcot-Marie-Tooth Disease
Bing-Wen Soong et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2013)
CORVET and HOPS tethering complexes - coordinators of endosome and lysosome fusion
Henning J. Kleine Balderhaar et al.
JOURNAL OF CELL SCIENCE (2013)
Lysosomal Trafficking, Antigen Presentation, and Microbial Killing Are Controlled by the Arf-like GTPase Arl8b
Salil Garg et al.
IMMUNITY (2011)
Development of a Novel Cross-linking Strategy for Fast and Accurate Identification of Cross-linked Peptides of Protein Complexes
Athit Kao et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Global quantification of mammalian gene expression control
Bjoern Schwanhaeusser et al.
NATURE (2011)
Flotillins play an essential role in Niemann-Pick C1-like 1-mediated cholesterol uptake
Liang Ge et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Regulation of Frizzled-Dependent Planar Polarity Signaling by a V-ATPase Subunit
Tobias Hermle et al.
CURRENT BIOLOGY (2010)
Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry
Zhuo Angel Chen et al.
EMBO JOURNAL (2010)
A Protein Interaction Network for Ecm29 Links the 26 S Proteasome to Molecular Motors and Endosomal Components
Carlos Gorbea et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Requirement of Prorenin Receptor and Vacuolar H+-ATPase-Mediated Acidification for Wnt Signaling
Cristina-Maria Cruciat et al.
SCIENCE (2010)
Hetero-oligomerization of reggie-1/flotillin-2 and reggie-2/flotillin-1 is required for their endocytosis
Tanja Babuke et al.
CELLULAR SIGNALLING (2009)
Hexosaminidase assays
Michaela Wendeler et al.
GLYCOCONJUGATE JOURNAL (2009)
Endocytosis of flotillin-1 and flotillin-2 is regulated by Fyn kinase
Kirsi Riento et al.
JOURNAL OF CELL SCIENCE (2009)
Improved prediction of protein side-chain conformations with SCWRL4
Georgii G. Krivov et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
Integral and associated lysosomal membrane proteins
Bernd Schroeder et al.
TRAFFIC (2007)
Coassembly of flotillins induces formation of membrane microdomains, membrane curvature, and vesicle budding
Manfred Frick et al.
CURRENT BIOLOGY (2007)
Glycosylation, transport, and complex formation of palmitoyl protein thioesterase 1 (PPT1) -: distinct characteristics in neurons
Annina Lyly et al.
BMC CELL BIOLOGY (2007)
The lipid raft proteins flotillins/reggies interact with Gαq and are involved in Gq-mediated p38 mitogen-activated protein kinase activation through tyrosine kinase
Yo Sugawara et al.
CELLULAR SIGNALLING (2007)
Reggie/flotillin proteins are organized into stable tetramers in membrane microdomains
Gonzalo P. Solis et al.
BIOCHEMICAL JOURNAL (2007)
Version 1.2 of the Crystallography and NMR system
Axel T. Brunger
NATURE PROTOCOLS (2007)
Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
Juri Rappsilber et al.
NATURE PROTOCOLS (2007)
A guided tour into subcellular colocalization analysis in light microscopy
S. Bolte et al.
JOURNAL OF MICROSCOPY (2006)
Lysosome membrane lipid microdomains: novel regulators of chaperone-mediated autophagy
Susmita Kaushik et al.
EMBO JOURNAL (2006)
Ancient origin of reggie (flotillin), reggie-like, and other lipid-raft proteins:: convergent evolution of the SPFH domain
E Rivera-Milla et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2006)
Flotillin-1 defines a clathrin-independent endocytic pathway in mammalian cells
OO Glebov et al.
NATURE CELL BIOLOGY (2006)
Membrane and raft association of reggie-1/flotillin-2:: role of myristoylation, palmitoylation and oligomerization and induction of filopodia by overexpression
C Neumann-Giesen et al.
BIOCHEMICAL JOURNAL (2004)
Disturbed cholesterol traffic but normal proteolytic function in LAMP-1/LAMP-2 double-deficient fibroblasts
EL Eskelinen et al.
MOLECULAR BIOLOGY OF THE CELL (2004)
Ultrastructural localization of flotillin-1 to cholesterol-rich membrane microdomains, rafts, in rat brain tissue
H Kokubo et al.
BRAIN RESEARCH (2003)
Frizzled-9 is activated by Wnt-2 and functions in Wnt/β-catenin signaling
T Karasawa et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Cloning, tissue distribution, and functional expression of the human G protein β4-subunit
V Ruiz-Velasco et al.
PHYSIOLOGICAL GENOMICS (2002)
Glycosylphosphatidyl inositol-anchored proteins and fyn kinase assemble in noncaveolar plasma membrane microdomains defined by reggie-1 and-2
CAO Stuermer et al.
MOLECULAR BIOLOGY OF THE CELL (2001)
Plasma membrane repair is mediated by Ca2+-regulated exocytosis of lysosomes
A Reddy et al.
CELL (2001)
The crystal structure of palmitoyl protein thioesterase 1 and the molecular basis of infantile neuronal ceroid lipofuscinosis
JJ Bellizzi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)