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Fibroblast-enriched endoplasmic reticulum protein TXNDC5 promotes pulmonary fibrosis by augmenting TGFβ signaling through TGFBR1 stabilization
Tzu-Han Lee et al.
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g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
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Xingtan Zhang et al.
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Andrew Butler et al.
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Accurate detection of complex structural variations using single-molecule sequencing
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X. Xie et al.
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Fast and accurate de novo genome assembly from long uncorrected reads
Robert Vaser et al.
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Ivica Medugorac et al.
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Derek M. Bickhart et al.
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K. Wang et al.
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Shogo Shiratsuki et al.
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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Mihaela Pertea et al.
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Peter H. Sudmant et al.
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Daehwan Kim et al.
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Qiang Qiu et al.
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Novel Y-chromosome polymorphisms in Chinese domestic yak
R. Li et al.
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Genome-wide variation within and between wild and domestic yak
Kun Wang et al.
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Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
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Michael I. Love et al.
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STAR: ultrafast universal RNA-seq aligner
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BLAST plus : architecture and applications
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Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
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Origin of mitochondrial DNA diversity of domestic yaks
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Global regulation of erythroid gene expression by transcription factor GATA-1
JJ Welch et al.
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TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
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GeneWise and genomewise
E Birney et al.
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