4.8 Article

Conserved signalling components coordinate epidermal patterning and cuticle deposition in barley

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Evolution of polarity protein BASL and the capacity for stomatal lineage asymmetric divisions

Ido Nir et al.

Summary: Asymmetric and oriented stem cell divisions are crucial for the production of patterned tissues. This study identifies BASL as a eudicot-specific polarity protein that plays a major role in stomatal lineage division and cell fate asymmetries. The findings also reveal differences in how asymmetric cell divisions are used for pattern formation in different species.

CURRENT BIOLOGY (2022)

Article Biochemistry & Molecular Biology

Misregulation of MYB16 expression causes stomatal cluster formation by disrupting polarity during asymmetric cell divisions

Shao-Li Yang et al.

Summary: The research shows that the downregulation of MYB16 by SPCH in meristemoids is crucial for stomatal patterning, indicating the pivotal role of SPCH in the correct placement of polarity proteins essential for stomatal formation.

PLANT CELL (2022)

Article Multidisciplinary Sciences

Connected function of PRAF/RLD and GNOM in membrane trafficking controls intrinsic cell polarity in plants

Lu Wang et al.

Summary: Cell polarity is crucial for cell morphogenesis and organismal development. The BASL and PRAF proteins are identified as important players in establishing cell polarity in the Arabidopsis stomatal lineage. The interaction between PRAF and GNOM proteins in the plasma membrane and endosomal trafficking contribute to the intrinsic cell polarity.

NATURE COMMUNICATIONS (2022)

Review Biochemistry & Molecular Biology

The origin and evolution of stomata

James W. Clark et al.

Summary: Stomata, an important innovation for land plants, originated in the common ancestor of land plants and have undergone reductive evolution. The ability of stomata to open and close is an ancestral state present in all lineages. Stomata's role in early land plants was to optimize carbon gain per unit water loss. Further research is needed to understand the origin and evolution of stomata.

CURRENT BIOLOGY (2022)

Article Biochemistry & Molecular Biology

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

Wenbin Guo et al.

Summary: 3D RNA-seq is a powerful tool for comprehensive analysis of RNA-seq data, with user-friendly features, rapid and accurate analysis of differential gene expression and alternative splicing.

RNA BIOLOGY (2021)

Article Plant Sciences

ZmSPL10/14/26 are required for epidermal hair cell fate specification on maize leaf

Dexin Kong et al.

Summary: The study found that three homologous ZmSPL transcription factors, ZmSPL10, ZmSPL14 and ZmSPL26, work together to promote epidermal hair fate on maize leaves.

NEW PHYTOLOGIST (2021)

Review Plant Sciences

Stomatal development in the context of epidermal tissues

Keiko U. Torii

Summary: Stomata are essential adjustable pores on plant shoots for efficient gas exchange and water control. Research in diverse plant species has revealed the conservation and uniqueness of core modules in stomatal development. Understanding the dynamic behaviors of stomatal precursor cells and their differentiation within the broader context of tissue and organ development can help optimize growth and productivity in specific agricultural applications and changing environments.

ANNALS OF BOTANY (2021)

Article Multidisciplinary Sciences

Transcriptional profiling reveals signatures of latent developmental potential in Arabidopsis stomatal lineage ground cells

Chin-Min Kimmy Ho et al.

Summary: In this study, the mixed potential of stomatal lineage ground cells in the Arabidopsis leaf epidermis was used as a model to investigate the balance between proliferation and differentiation in cells. Transcriptome analysis revealed that these cells seem to be poised between proliferation and endoreduplication, with the presence of specific RNA polymerase II-related mediator complex interactors and transcription factors influencing cell proliferation during leaf development.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Multidisciplinary Sciences

EORNA, a barley gene and transcript abundance database

Linda Milne et al.

Summary: A high-quality barley gene reference transcript dataset (BaRTv1.0) was used to quantify gene and transcript abundances across 22 RNA-seq experiments, leading to the development of a Barley Expression Database (EORNA) for visualizing comparative gene and transcript abundance data. The database provides gene and transcript models for all transcripts in BaRTv1.0, allowing users to easily identify and analyze transcript data.

SCIENTIFIC DATA (2021)

Review Plant Sciences

Establishing asymmetry: stomatal division and differentiation in plants

Xiaoyu Guo et al.

Summary: This review article discusses the role of stomatal pores in gas exchange in plant leaves and the development of stomatal guard cells. It highlights how intrinsic molecules drive stomatal asymmetric cell division in multiple dimensions, from transcriptional activities in the nucleus to the dynamic assembly of the polarity complex at the cell cortex. External cues feeding into the regulation of core molecular machinery required for stomatal development are also emphasized.

NEW PHYTOLOGIST (2021)

Article Biochemistry & Molecular Biology

Mapping and engineering of auxin-induced plasma membrane dissociation in BRX family proteins

Samuel W. H. Koh et al.

Summary: Angiosperms have evolved phloem for long-distance metabolite transport, involving genes like BRX related to root protophloem differentiation. The functionally divergent BRX protein family plays a crucial role, with experiments showing the importance of membrane-associated tandem BRX domains in conveying biological outputs.

PLANT CELL (2021)

Article Plant Sciences

Form, development and function of grass stomata

Tiago D. G. Nunes et al.

PLANT JOURNAL (2020)

Review Plant Sciences

Guard Cell Metabolism and Stomatal Function

Tracy Lawson et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 71, 2020 (2020)

Review Biochemistry & Molecular Biology

S-acylation in plants: an expanding field

Piers A. Hemsley

BIOCHEMICAL SOCIETY TRANSACTIONS (2020)

Article Biochemistry & Molecular Biology

The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants

Chen Jiao et al.

Article Plant Sciences

The Role of Grass MUTE Orthologues During Stomatal Development

Laura Serna

FRONTIERS IN PLANT SCIENCE (2020)

Article Plant Sciences

Origins and Evolution of Cuticle Biosynthetic Machinery in Land Plants

Lingyao Kong et al.

PLANT PHYSIOLOGY (2020)

Article Multidisciplinary Sciences

The barley pan-genome reveals the hidden legacy of mutation breeding

Murukarthick Jayakodi et al.

NATURE (2020)

Article Developmental Biology

APETALA2 control of barley internode elongation

Vrushali Patil et al.

DEVELOPMENT (2019)

Article Biochemistry & Molecular Biology

Transcriptomic Analysis of Leaf Sheath Maturation in Maize

Lei Dong et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Biochemistry & Molecular Biology

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

Uku Raudvere et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biotechnology & Applied Microbiology

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

Cecile Monat et al.

GENOME BIOLOGY (2019)

Article Biochemistry & Molecular Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Multidisciplinary Sciences

A chromosome conformation capture ordered sequence of the barley genome

Martin Mascher et al.

NATURE (2017)

Review Plant Sciences

Molecular Evolution of Grass Stomata

Zhong-Hua Chen et al.

TRENDS IN PLANT SCIENCE (2017)

Article Plant Sciences

Development and Evaluation of a Barley 50k iSelect SNP Array

Micha M. Bayer et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Multidisciplinary Sciences

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Sebastian Beier et al.

SCIENTIFIC DATA (2017)

Article Plant Sciences

Evolution and development of monocot stomata

Paula J. Rudall et al.

AMERICAN JOURNAL OF BOTANY (2017)

Article Biochemistry & Molecular Biology

Tissue-wide Mechanical Forces Influence the Polarity of Stomatal Stem Cells in Arabidopsis

Martin Bringmann et al.

CURRENT BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Phosphorylation of the Polarity Protein BASL Differentiates Asymmetric Cell Fate through MAPKs and SPCH

Ying Zhang et al.

CURRENT BIOLOGY (2016)

Article Biochemical Research Methods

Sambamba: fast processing of NGS alignment formats

Artem Tarasov et al.

BIOINFORMATICS (2015)

Article Multidisciplinary Sciences

Four hundred million years of silica biomineralization in land plants

Elizabeth Trembath-Reichert et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

A mechanically sensitive cell layer regulates the physical properties of the Arabidopsis seed coat

Audrey Creff et al.

NATURE COMMUNICATIONS (2015)

Article Plant Sciences

Epidermal Patterning and Silica Phytoliths in Grasses: An Evolutionary History

Paula J. Rudall et al.

BOTANICAL REVIEW (2014)

Article Biochemical Research Methods

Using Tablet for visual exploration of second-generation sequencing data

Iain Milne et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Review Plant Sciences

The Formation and Function of Plant Cuticles

Trevor H. Yeats et al.

PLANT PHYSIOLOGY (2013)

Article Biochemical Research Methods

NIH Image to ImageJ: 25 years of image analysis

Caroline A. Schneider et al.

NATURE METHODS (2012)

Article Plant Sciences

Genetic Dissection of Barley Morphology and Development

Arnis Druka et al.

PLANT PHYSIOLOGY (2011)

Article Multidisciplinary Sciences

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek et al.

PLOS ONE (2011)

Review Plant Sciences

Stomata: key players in the earth system, past and present

Joseph A. Berry et al.

CURRENT OPINION IN PLANT BIOLOGY (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Use of Arabidopsis eceriferum Mutants to Explore Plant Cuticle Biosynthesis

Lacey Samuels et al.

Jove-Journal of Visualized Experiments (2008)

Article Biotechnology & Applied Microbiology

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations

Pongsakorn Wangkumhang et al.

BMC GENOMICS (2007)

Article Biochemistry & Molecular Biology

The CER3 wax biosynthetic gene from Arabidopsis thaliana is allelic to WAX2/YRE/FLP1

Owen Rowland et al.

FEBS LETTERS (2007)

Article Developmental Biology

Control of cell and petal morphogenesis by R2R3 MYB transcription factors

Kim Baumann et al.

DEVELOPMENT (2007)

Article Plant Sciences

The mechanical diversity of stomata and its significance in gas-exchange control

Peter J. Franks et al.

PLANT PHYSIOLOGY (2007)

Article Plant Sciences

Stomatal clustering in Cinnamomum camphora

X. Zhao et al.

SOUTH AFRICAN JOURNAL OF BOTANY (2006)

Article Biochemistry & Molecular Biology

A MAPKK kinase gene regulates extra-embryonic cell fate in Arabidopsis

W Lukowitz et al.

Article Multidisciplinary Sciences

Stomatal development and pattern controlled by a MAPKK kinase

DC Bergmann et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

SPAGEDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels

OJ Hardy et al.

MOLECULAR ECOLOGY NOTES (2002)

Article Multidisciplinary Sciences

The HIC signalling pathway links CO2 perception to stomatal development

JE Gray et al.

NATURE (2000)