4.6 Article

ORF-Interrupting Mutations in Monkeypox Virus Genomes from Washington and Ohio, 2022

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Virology

Genomic annotation and molecular evolution of monkeypox virus outbreak in 2022

Lulan Wang et al.

Summary: Monkeypox virus (MPXV) has been circulating in West and Central Africa. Recent outbreaks in nonendemic countries were analyzed, revealing that the MPXV-2022 strains belong to the same lineage as the 2018 strain with several new mutations. Some specific proteins were found to be more prone to mutation in the MPXV genome. This study provides insights into the ongoing MPXV outbreak and identifies novel mutations for further research.

JOURNAL OF MEDICAL VIROLOGY (2023)

Article Immunology

Exportation of Monkeypox Virus From the African Continent

Matthew R. Mauldin et al.

Summary: There is no direct linkage between the individuals who exported the monkeypox cases from Nigeria, but there is limited genetic variation among the viruses, suggesting a possible common source or independent infections within a small geographic area.

JOURNAL OF INFECTIOUS DISEASES (2022)

Article Biotechnology & Applied Microbiology

SignalP 6.0 predicts all five types of signal peptides using protein language models

Felix Teufel et al.

Summary: Signal peptides are short amino acid sequences that regulate protein secretion and translocation. SignalP 6.0, a machine learning model, is introduced to detect all types of signal peptides, including those applicable to metagenomic data.

NATURE BIOTECHNOLOGY (2022)

Article Biochemistry & Molecular Biology

Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

Joana Isidro et al.

Summary: In this study, shotgun metagenomics were used to rapidly reconstruct and characterize the genome sequences of the largest monkeypox virus outbreak in non-endemic countries so far. The findings indicate that the outbreak most likely has a single origin and that the virus belongs to clade 3. Furthermore, the study suggests the involvement of host APOBEC3 in viral evolution and reveals signs of ongoing microevolution in the virus.

NATURE MEDICINE (2022)

Article Public, Environmental & Occupational Health

Monkeypox Outbreak — Nine States, May 2022

Faisal S. Minhaj et al.

MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT (2022)

Article Biochemistry & Molecular Biology

Pfam: The protein families database in 2021

Jaina Mistry et al.

Summary: The Pfam database has recently added a large number of protein families and domains, made revisions for COVID-19 research, and introduced Pfam-B as a supplement. These updates and improvements can help researchers classify protein sequences more effectively and conduct related studies.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

CDD/SPARCLE: the conserved domain database in 2020

Shennan Lu et al.

NUCLEIC ACIDS RESEARCH (2020)

Review Virology

Monkeypox Virus in Nigeria: Infection Biology, Epidemiology, and Evolution

Emmanuel Alakunle et al.

VIRUSES-BASEL (2020)

Article Biotechnology & Applied Microbiology

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Nathan D. Grubaugh et al.

GENOME BIOLOGY (2019)

Article Biochemical Research Methods

Nextstrain: real-time tracking of pathogen evolution

James Hadfield et al.

BIOINFORMATICS (2018)

Article Biochemical Research Methods

Species-specific differentiation of variola, monkeypox, and varicella-zoster viruses by multiplex real-time PCR assay

Rinat A. Maksyutov et al.

JOURNAL OF VIROLOGICAL METHODS (2016)

Article Virology

Deciphering Poxvirus Gene Expression by RNA Sequencing and Ribosome Profiling

Zhilong Yang et al.

JOURNAL OF VIROLOGY (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Microbiology

T Cell Inactivation by Poxviral B22 Family Proteins Increases Viral Virulence

Dina Alzhanova et al.

PLOS PATHOGENS (2014)

Article Immunology

Genomic Variability of Monkeypox Virus among Humans, Democratic Republic of the Congo

Jeffrey R. Kugelman et al.

EMERGING INFECTIOUS DISEASES (2014)

Article Biochemistry & Molecular Biology

Poxviruses Deploy Genomic Accordions to Adapt Rapidly against Host Antiviral Defenses

Nels C. Elde et al.

Review Virology

Orthopoxvirus Genes That Mediate Disease Virulence and Host Tropism

Sergei N. Shchelkunov

ADVANCES IN VIROLOGY (2012)

Article Biotechnology & Applied Microbiology

Genes in the terminal regions of orthopoxvirus genomes experience adaptive molecular evolution

David J. Esteban et al.

BMC GENOMICS (2011)

Article Biochemistry & Molecular Biology

Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses

Cadhla Firth et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Virology

Orthopoxvirus Genome Evolution: The Role of Gene Loss

Robert Curtis Hendrickson et al.

VIRUSES-BASEL (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Crystal structure of poxvirus thymidylate kinase: An unexpected dimerization has implications for antiviral therapy

Christophe Caillat et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Immunology

Zoonotic orthopoxviruses encode a high-affinity antagonist of NKG2D

Jessica A. Campbell et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2007)