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Johanna B. Holm et al.
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M. A. Rasmussen et al.
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Daily Vaginal Microbiota Fluctuations Associated with Natural Hormonal Cycle, Contraceptives, Diet, and Exercise
Stephanie D. Song et al.
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Yao Kong et al.
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Changes in the vaginal microbiota across a gradient of urbanization
Daniela Vargas-Robles et al.
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Andrew Oliver et al.
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Quantitative modeling predicts mechanistic links between pre-treatment microbiome composition and metronidazole efficacy in bacterial vaginosis
Christina Y. Lee et al.
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Kate L. Bowerman et al.
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Impact of vaginal microbiome communities on HIV antiretroviral-based pre-exposure prophylaxis (PrEP) drug metabolism
Ryan K. Cheu et al.
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Vaginal microbiome-hormonal contraceptive interactions associate with the mucosal proteome and HIV acquisition
Laura Noel-Romas et al.
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VALENCIA: a nearest centroid classification method for vaginal microbial communities based on composition
Michael T. France et al.
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Conor Feehily et al.
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MOFA plus : a statistical framework for comprehensive integration of multi-modal single-cell data
Ricard Argelaguet et al.
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Web-gLV: A Web Based Platform for Lotka-Volterra Based Modeling and Simulation of Microbial Populations
Bhusan K. Kuntal et al.
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A review of 10 years of human microbiome research activities at the US National Institutes of Health, Fiscal Years 2007-2016
Lita Proctor et al.
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The vaginal microbiome and preterm birth
Jennifer M. Fettweis et al.
NATURE MEDICINE (2019)
Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy
Myrna G. Serrano et al.
NATURE MEDICINE (2019)
Deciphering the complex interplay between microbiota, HPV, inflammation and cancer through cervicovaginal metabolic profiling
Zehra Esra Ilhan et al.
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A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction
Yi-Hui Zhou et al.
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Simone Filardo et al.
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The Vaginal Microbiota and Behavioral Factors Associated With Genital Candida albicans Detection in Reproductive-Age Women
Sarah E. Brown et al.
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Vonetta L. Edwards et al.
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Chenhao Li et al.
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Learning representations of microbe-metabolite interactions
James T. Morton et al.
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Highly diverse anaerobe-predominant vaginal microbiota among HIV-infected pregnant women in Zambia
Joan T. Price et al.
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Camilla Ceccarani et al.
SCIENTIFIC REPORTS (2019)
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Francesco De Seta et al.
FRONTIERS IN MICROBIOLOGY (2019)
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities
Federico Baldini et al.
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DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays
Amrit Singh et al.
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Lactobacillus iners-dominated vaginal microbiota is associated with increased susceptibility to Chlamydia trachomatis infection in Dutch women: a case-control study
Robin van Houdt et al.
SEXUALLY TRANSMITTED INFECTIONS (2018)
Cigarette smoking is associated with an altered vaginal tract metabolomic profile
T. M. Nelson et al.
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BURRITO: An Interactive Multi-Omic Tool for Visualizing Taxa-Function Relationships in Microbiome Data
Colin P. McNally et al.
FRONTIERS IN MICROBIOLOGY (2018)
Influence of culture media, pH and temperature on growth and bacteriocin production of bacteriocinogenic lactic acid bacteria
En Yang et al.
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Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections
Marjon G. J. de Vos et al.
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Vaginal bacteria modify HIV tenofovir microbicide efficacy in African women
Nichole R. Klatt et al.
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BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
Eugen Bauer et al.
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Evidence that the endometrial microbiota has an effect on implantation success or failure
Inmaculada Moreno et al.
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Travis E. Gibson et al.
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B. Vitali et al.
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Amy McMillan et al.
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Sparse and Compositionally Robust Inference of Microbial Ecological Networks
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Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?
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Association between the vaginal microbiota, menopause status, and signs of vulvovaginal atrophy
Rebecca M. Brotman et al.
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Charles K. Fisher et al.
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Inferring microbial interaction networks based on consensus similarity network fusion
Jiang XingPeng et al.
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Characterization of the vaginal microbiota of healthy Canadian women through the menstrual cycle
Bonnie Chaban et al.
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Pawel Gajer et al.
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Daniel Machado et al.
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Applications of genome-scale metabolic reconstructions
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Gary An et al.
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Emilia H. Koumans et al.
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