4.7 Editorial Material

Tracking contemporary microbial evolution in a changing ocean

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Environmental Sciences

Impact of polypropylene microplastics and chemical pollutants on European sea bass (Dicentrarchus labrax) gut microbiota and health

Daniel Montero et al.

Summary: Plastic pollution is a global issue affecting marine ecosystems, with microplastics posing a threat to marine organisms. This study revealed that ingestion of microplastics and pollutants by marine fish led to inflammatory responses in the intestine and alterations in gut microbiota, indicating potential risks for marine fish.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Article Biodiversity Conservation

Marine heatwaves drive recurrent mass mortalities in the Mediterranean Sea

Joaquim Garrabou et al.

Summary: This study reveals that the Mediterranean Sea has experienced exceptional thermal conditions, leading to five consecutive years of mass mortality events of marine organisms. The occurrence of these events is significantly related to the heat exposure from marine heatwaves observed at the surface and depths. The Mediterranean Sea is facing an unprecedented threat to its ecosystem's health and functioning due to the accelerated ecological impacts of marine heatwaves.

GLOBAL CHANGE BIOLOGY (2022)

Article Multidisciplinary Sciences

Spike mutation D614G alters SARS-CoV-2 fitness

Jessica A. Plante et al.

Summary: The D614G substitution in the SARS-CoV-2 spike protein enhances viral replication and infectivity in human lung epithelial cells, primary airway tissues, and hamsters. This variant may increase transmission in the upper respiratory tract and doesn't seem to significantly reduce vaccine efficacy. Further research on therapeutic antibodies targeting the circulating G614 virus is recommended.

NATURE (2021)

Editorial Material Evolutionary Biology

Human-induced evolution: Signatures, processes and mechanisms underneath anthropogenic footprints on natural systems

Miguel Baltazar-Soares et al.

Summary: Human activities have significantly impacted the global environment, leading to the creation of the Anthropocene era. Understanding the effects of human-induced selection on various levels of diversity is crucial for developing appropriate conservation programmes while ensuring the maintenance of healthy systems. The contributions in this special issue examine different types of human-mediated selection pressures and question their implications on evolutionary solutions, population dynamics, and the impact of climate change.

EVOLUTIONARY APPLICATIONS (2021)

Review Biochemistry & Molecular Biology

The Microbial Conveyor Belt: Connecting the Globe through Dispersion and Dormancy

Mireia Mestre et al.

Summary: Despite the recent increase in knowledge about microorganisms, the processes determining their global distribution and functioning have not been fully understood. Microbial dormant stages are adapted to specific adverse conditions related to their dispersion path, indicating that dispersion is not completely random. Long-term dormancy enhances microbial dispersion, promoting their ubiquity. The global, recurrent, and spatially cyclical dispersion of microorganisms, known as the Microbial Conveyor Belt, directly influences microbial distribution and the functioning of the Earth system.

TRENDS IN MICROBIOLOGY (2021)

Editorial Material Multidisciplinary Sciences

Want to track pandemic variants faster? Fix the bioinformatics bottleneck Comment

Emma B. Hodcroft et al.

Summary: Researchers are in need of new approaches to control the pandemic as existing tools, rules, and incentives are struggling to cope with the flood of coronavirus genome sequences.

NATURE (2021)

Editorial Material Biochemistry & Molecular Biology

Molecular Determinants of SARS-CoV-2 Variants

Arinjay Banerjee et al.

Summary: The evolution of SARS-CoV-2 is expected due to the nature of virus replication. The selection and establishment of variants in the human population depend on viral fitness and on molecular and immunological selection pressures. This article discusses how mechanisms of replication and recombination may contribute to the emergence of current and future variants of SARS-CoV-2.

TRENDS IN MICROBIOLOGY (2021)

Article Biology

Environmental palaeogenomic reconstruction of an Ice Age algal population

Youri Lammers et al.

Summary: The study demonstrates the potential of using lake sedimentary ancient DNA (sedaDNA) for population genomic analysis of Nannochloropsis algae. Two major haplogroups were identified for each organellar genome, belonging to known varieties of N. limnetica. This approach opens the door to environmental palaeogenomics and unlocks the full potential of sedaDNA.

COMMUNICATIONS BIOLOGY (2021)

Article Biochemistry & Molecular Biology

Elevated rates of horizontal gene transfer in the industrialized human microbiome

Mathieu Groussin et al.

Summary: Industrialization has significant impacts on gene transfer in human gut bacteria, with higher rates of horizontal gene transfer (HGT) associated with industrialized lifestyles. This suggests that gut bacteria continuously acquire new functionality based on host lifestyle changes.
Article Biochemistry & Molecular Biology

Sediment archives reveal irreversible shifts in plankton communities after World War II and agricultural pollution

Raffael Siano et al.

Summary: This study used sediment cores collected from different sites in the Bay of Brest, northeast Atlantic, France, to retrospectively analyze the effects of human pollution on marine protists over approximately 1,400 years. The research found significant shifts in protist communities after war and agricultural pollution events, with no recovery to a Middle Ages baseline composition, highlighting the irreversible impact of human contaminations on marine microbial compartments.

CURRENT BIOLOGY (2021)

Article Multidisciplinary Sciences

Adaptive differentiation and rapid evolution of a soil bacterium along a climate gradient

Alexander B. Chase et al.

Summary: The study found that microbial community responses to environmental change are closely related to ecological processes and evolutionary processes. Ecotypes adapted to local conditions and contemporary evolution were identified, showing how both demographic shifts of previously adapted ecotypes and contemporary evolution can alter the diversity of a soil microbiome on the same timescale.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Multidisciplinary Sciences

Spread of a SARS-CoV-2 variant through Europe in the summer of 2020

Emma B. Hodcroft et al.

Summary: A variant of SARS-CoV-2, 20E (EU1), was identified in Spain in early summer 2020 and later spread across Europe. Despite not showing increased transmissibility, the variant's success can be attributed to rising incidence in Spain, resumption of travel, and lack of effective screening and containment measures. Travel played a significant role in introducing the variant multiple times to European countries during the summer, undermining local efforts to prevent SARS-CoV-2 infection.

NATURE (2021)

Article Biotechnology & Applied Microbiology

Time travel in microorganisms

Carlos Pedros-Alio

SYSTEMATIC AND APPLIED MICROBIOLOGY (2021)

Editorial Material Microbiology

Tracking Microbial Evolution in the Subseafloor Biosphere

Rika E. Anderson

Summary: The deep marine subsurface is a massive biosphere hosting archaea, bacteria, and viruses, playing key roles in global biogeochemical cycles. Evolutionary trajectories of subsurface microbes may differ from surface microbes, but technological advancements offer opportunities to study their dynamics. The sequencing revolution and marine infrastructure advancements promise a deeper understanding of how the microbial biosphere changes, adapts, and evolves over time.

MSYSTEMS (2021)

Article Engineering, Electrical & Electronic

Subsurface automated samplers for eDNA (SASe) for biological monitoring and research

Nathan Formel et al.

Summary: Sampling of environmental DNA (eDNA) in seawater is a common method to assess marine biodiversity. Despite recent advancements in automated water samplers, the high cost remains a barrier. To address this, researchers have designed a low-cost subsurface automated sampler for eDNA (SASe) for repeated field sampling.

HARDWAREX (2021)

Review Geosciences, Multidisciplinary

Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations

Eric Capo et al.

Summary: The use of lake sedimentary DNA to track long-term changes in terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Despite being widely applied, there are still knowledge gaps that require further research to ensure the reliability of sedimentary DNA signals. By synthesizing the latest literature and case studies, state-of-the-art analytical procedures and recommendations have been provided for effective sampling, extraction, amplification, quantification, and generation of DNA inventories from sedimentary ancient DNA (sedaDNA) using high-throughput sequencing technologies.

QUATERNARY (2021)

Article Multidisciplinary Sciences

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA

Francois Keck et al.

NATURE COMMUNICATIONS (2020)

Article Multidisciplinary Sciences

Horizontal gene transfer potentiates adaptation by reducing selective constraints on the spread of genetic variation

Laura C. Woods et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Review Multidisciplinary Sciences

Using paleo-archives to safeguard biodiversity under climate change

Damien A. Fordham et al.

SCIENCE (2020)

Article Biochemistry & Molecular Biology

Evolutionary change in the human gut microbiome: From a static to a dynamic view

Isabel Gordo

PLOS BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

Nandita R. Garud et al.

PLOS BIOLOGY (2019)

Article Microbiology

Adaptive Evolution within Gut Microbiomes of Healthy People

Shijie Zhao et al.

CELL HOST & MICROBE (2019)

Review Biochemistry & Molecular Biology

Microbial Experimental Evolution - a proving ground for evolutionary theory and a tool for discovery

Michael J. McDonald

EMBO REPORTS (2019)

Article Multidisciplinary Sciences

Global warming transforms coral reef assemblages

Terry P. Hughes et al.

NATURE (2018)

Review Ecology

Cracking the Code of Biodiversity Responses to Past Climate Change

David Nogues-Bravo et al.

TRENDS IN ECOLOGY & EVOLUTION (2018)

Review Microbiology

Effective models and the search for quantitative principles in microbial evolution

Benjamin H. Good et al.

CURRENT OPINION IN MICROBIOLOGY (2018)

Editorial Material Multidisciplinary Sciences

No escape from the tangled bank

Joshua B. Plotkin

NATURE (2017)

Article Multidisciplinary Sciences

The dynamics of molecular evolution over 60,000 generations

Benjamin H. Good et al.

NATURE (2017)

Article Multidisciplinary Sciences

Microbial community assembly and evolution in subseafloor sediment

Piotr Starnawski et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Evolutionary consequences of multidriver environmental change in an aquatic primary producer

Georgina L. Brennan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Biodiversity Conservation

Net effects of multiple stressors in freshwater ecosystems: a meta-analysis

Michelle C. Jackson et al.

GLOBAL CHANGE BIOLOGY (2016)

Article Multidisciplinary Sciences

Experimental evolution gone wild

M. Scheinin et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2015)

Article Multidisciplinary Sciences

Quantitative evolutionary dynamics using high-resolution lineage tracking

Sasha F. Levy et al.

NATURE (2015)

Article Environmental Sciences

Growth responses of a green alga to multiple environmental drivers

Georgina Brennan et al.

NATURE CLIMATE CHANGE (2015)

Article Environmental Sciences

Lessons learned from ocean acidification research

Ulf Riebesell et al.

Nature Climate Change (2014)

Review Evolutionary Biology

Evolutionary potential of marine phytoplankton under ocean acidification

Sinead Collins et al.

EVOLUTIONARY APPLICATIONS (2014)

Article Environmental Sciences

Adaptation of a globally important coccolithophore to ocean warming and acidification

Lothar Schlueter et al.

NATURE CLIMATE CHANGE (2014)

Editorial Material Biology

The founding charter of the Genomic Observatories Network

Neil Davies et al.

GIGASCIENCE (2014)

Article Biology

Short- and long-term conditioning of a temperate marine diatom community to acidification and warming

Avery O. Tatters et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Article Multidisciplinary Sciences

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

Pedro Flombaum et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Environmental Sciences

Global imprint of climate change on marine life

Elvira S. Poloczanska et al.

NATURE CLIMATE CHANGE (2013)

Article Geosciences, Multidisciplinary

Adaptive evolution of a key phytoplankton species to ocean acidification

Kai T. Lohbeck et al.

NATURE GEOSCIENCE (2012)

Article Multidisciplinary Sciences

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

B. Jesse Shapiro et al.

SCIENCE (2012)

Article Genetics & Heredity

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes

Tami D. Lieberman et al.

NATURE GENETICS (2011)

Review Microbiology

Microbial seed banks: the ecological and evolutionary implications of dormancy

Jay T. Lennon et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

Zachary D. Blount et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Multidisciplinary Sciences

The microbial engines that drive Earth's biogeochemical cycles

Paul G. Falkowski et al.

SCIENCE (2008)

Article Multidisciplinary Sciences

Fossil genes and microbes in the oldest ice on Earth

Kay D. Bidle et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Genetics & Heredity

Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation

SF Elena et al.

NATURE REVIEWS GENETICS (2003)