相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。G4LDB 2.2: a database for discovering and studying G-quadruplex and i-Motif ligands
Yu-Huan Wang et al.
NUCLEIC ACIDS RESEARCH (2022)
The Sequence Read Archive: a decade more of explosive growth
Kenneth Katz et al.
NUCLEIC ACIDS RESEARCH (2022)
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
Andrew D. Yates et al.
NUCLEIC ACIDS RESEARCH (2022)
Deep Learning in RNA Structure Studies
Haopeng Yu et al.
FRONTIERS IN MOLECULAR BIOSCIENCES (2022)
A Key Molecular Regulator, RNA G-Quadruplex and Its Function in Plants
Haifeng Liu et al.
FRONTIERS IN PLANT SCIENCE (2022)
G-Quadruplexes in RNA Biology: Recent Advances and Future Directions
Leila Dumas et al.
TRENDS IN BIOCHEMICAL SCIENCES (2021)
G-quadruplex RNA motifs influence gene expression in the malaria parasite Plasmodium falciparum
Franck Dumetz et al.
NUCLEIC ACIDS RESEARCH (2021)
RNA G-quadruplexes (rG4s): genomics and biological functions
Kaixin Lyu et al.
NUCLEIC ACIDS RESEARCH (2021)
Novel insights into the pervasive role of RNA structure in post-transcriptional regulation of gene expression in plants
Huakun Zhang et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
The role of RNA G-quadruplexes in human diseases and therapeutic strategies
Prakash Kharel et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2020)
A guide to computational methods for G-quadruplex prediction
Emilia Puig Lombardi et al.
NUCLEIC ACIDS RESEARCH (2020)
Keth-seq for transcriptome-wide RNA structure mapping
Xiaocheng Weng et al.
NATURE CHEMICAL BIOLOGY (2020)
RNA G-Quadruplex Structures Mediate Gene Regulation in Bacteria
Xiaolong Shao et al.
MBIO (2020)
rG4-seeker enables high-confidence identification of novel and non-canonical rG4 motifs from rG4-seq experiments
Eugene Yui-Ching Chow et al.
RNA BIOLOGY (2020)
RNA G-quadruplex structures exist and function in vivo in plants
Xiaofei Yang et al.
GENOME BIOLOGY (2020)
Systematic evaluation and optimization of the experimental steps in RNA G-quadruplex structure sequencing
Pui Yan Yeung et al.
SCIENTIFIC REPORTS (2019)
Plant-GQ: An Integrative Database of G-Quadruplex in Plant
Fangfang Ge et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2019)
G-Quadruplexes influence pri-microRNA processing
Samuel G. Rouleau et al.
RNA BIOLOGY (2018)
Transcriptome-wide identification of transient RNA G-quadruplexes in human cells
Sunny Y. Yang et al.
NATURE COMMUNICATIONS (2018)
RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms
Marta M. Fay et al.
JOURNAL OF MOLECULAR BIOLOGY (2017)
3' UTR G-quadruplexes regulate miRNA binding
Samuel Rouleau et al.
RNA (2017)
Structural Analysis using SHALiPE to Reveal RNAG-Quadruplex Formation in Human Precursor MicroRNA
Chun Kit Kwok et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)
MultiQC: summarize analysis results for multiple tools and samples in a single report
Philip Ewels et al.
BIOINFORMATICS (2016)
rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome
Chun Kit Kwok et al.
NATURE METHODS (2016)
Re-evaluation of G-quadruplex propensity with G4Hunter
Amina Bedrat et al.
NUCLEIC ACIDS RESEARCH (2016)
RNA G-quadruplexes are globally unfolded in eukaryotic cells and depleted in bacteria
Junjie U. Guo et al.
SCIENCE (2016)
G4IPDB: A database for G-quadruplex structure forming nucleic acid interacting proteins
Subodh Kumar Mishra et al.
SCIENTIFIC REPORTS (2016)
Metal Cations in G-Quadruplex Folding and Stability
Debmalya Bhattacharyya et al.
FRONTIERS IN CHEMISTRY (2016)
G-quadruplexes: Emerging roles in neurodegenerative diseases and the non-coding transcriptome
Roberto Simone et al.
FEBS LETTERS (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
G4RNA: an RNA G-quadruplex database
Jean-Michel Garant et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2015)
Aven recognition of RNA G-quadruplexes regulates translation of the mixed lineage leukemia protooncogenes
Palaniraja Thandapani et al.
ELIFE (2015)
Insights into RNA structure and function from genome-wide studies
Stefanie A. Mortimer et al.
NATURE REVIEWS GENETICS (2014)
The folding of 5′-UTR human G-quadruplexes possessing a long central loop
Rachel Jodoin et al.
RNA (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
NCBI GEO: archive for functional genomics data sets-update
Tanya Barrett et al.
NUCLEIC ACIDS RESEARCH (2013)
Exploring mRNA 3'-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening
Jean-Denis Beaudoin et al.
NUCLEIC ACIDS RESEARCH (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
A Sequence-Independent Analysis of the Loop Length Dependence of Intramolecular RNA G-Quadruplex Stability and Topology
Amy Y. Q. Zhang et al.
BIOCHEMISTRY (2011)
Monomorphic RNA G-Quadruplex and Polymorphic DNA G-Quadruplex Structures Responding to Cellular Environmental Factors
Dong-Hao Zhang et al.
BIOCHEMISTRY (2010)
RNAstructure: software for RNA secondary structure prediction and analysis
Jessica S. Reuter et al.
BMC BIOINFORMATICS (2010)
5'-UTR G-quadruplex structures acting as translational repressors
Jean-Denis Beaudoin et al.
NUCLEIC ACIDS RESEARCH (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes
Anthony Bugaut et al.
BIOCHEMISTRY (2008)
G-quadruplexes: the beginning and end of UTRs
Julian Leon Huppert et al.
NUCLEIC ACIDS RESEARCH (2008)
Greglist: a database listing potential G-quadruplex regulated genes
Ren Zhang et al.
NUCLEIC ACIDS RESEARCH (2008)
GRSDB2 and GRS_UTRdb: databases of quadruplex forming G-rich sequences in pre-mRNAs and mRNAs
Oleg Kikin et al.
NUCLEIC ACIDS RESEARCH (2008)
Circular dichroism of quadruplex DNAs: Applications to structure, cation effects and ligand binding
Sattanathan Paramasivan et al.
METHODS (2007)
Prevalence of quadruplexes in the human genome
JL Huppert et al.
NUCLEIC ACIDS RESEARCH (2005)