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TTS Mapping: integrative WEB tool for analysis of triplex formation target DNA Sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome
Piroon Jenjaroenpun et al.
BMC GENOMICS (2009)
DNA Repair and DNA Triplet Repeat Expansion: The Impact of Abasic Lesions on Triplet Repeat DNA Energetics
Jens Voelker et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)
Stable G-quadruplexes are found outside nucleosome-bound regions
Han Min Wong et al.
MOLECULAR BIOSYSTEMS (2009)
Role of TLS DNA Polymerases eta and kappa in Processing Naturally Occurring Structured DNA in Human Cells
Remy Betous et al.
MOLECULAR CARCINOGENESIS (2009)
Large-Scale Expansions of Friedreich's Ataxia GAA Repeats in Yeast
Alexander A. Shishkin et al.
MOLECULAR CELL (2009)
dUTP incorporation into genomic DNA is linked to transcription in yeast
Nayun Kim et al.
NATURE (2009)
SRS2 and SGS1 prevent chromosomal breaks and stabilize triplet repeats by restraining recombination
Alix Kerrest et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Replisome stalling and stabilization at CGG repeats, which are responsible for chromosomal fragility
Irina Voineagu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Mismatch repair and nucleotide excision repair proteins cooperate in the recognition of DNA interstrand crosslinks
Junhua Zhao et al.
NUCLEIC ACIDS RESEARCH (2009)
RecQ helicases: multifunctional genome caretakers
Wai Kit Chu et al.
NATURE REVIEWS CANCER (2009)
Chromosome fragility at GAA tracts in yeast depends on repeat orientation and requires mismatch repair
Hyun-Min Kim et al.
EMBO JOURNAL (2008)
Satellite DNAs between selfishness and functionality: Structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin
Miroslav Plohl et al.
GENE (2008)
Processing of G4 DNA by Dna2 helicase/nuclease and replication protein a (RPA) provides insights into the mechanism of Dna2/RPA substrate recognition
Taro Masuda-Sasa et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Friedreich's Ataxia GAA.TTC Duplex and GAA.GAA.TTC Triplex Structures Exclude Nucleosome Assembly
Haihe Ruan et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Mus81-dependent double-strand DNA breaks at in vivo-generated cruciform structures in S-cerevisiae
Atina G. Cote et al.
MOLECULAR CELL (2008)
SbcCD causes a double-strand break at a DNA palindrome in the Escherichia coli chromosome
John K. Eykelenboom et al.
MOLECULAR CELL (2008)
Inhibitory effect of a short Z-DNA forming sequence on transcription elongation by T7 RNA polymerase
Jennifer V. Ditlevson et al.
NUCLEIC ACIDS RESEARCH (2008)
Stability and kinetics of G-quadruplex structures
Andrew N. Lane et al.
NUCLEIC ACIDS RESEARCH (2008)
Activities of human exonuclease 1 that promote cleavage of transcribed immunoglobulin switch regions
Aarthy C. Vallur et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Replication stalling at unstable inverted repeats: Interplay between DNA hairpins and fork stabilizing proteins
Irina Voineagu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA
Sung Chul Ha et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae
Steve G. Hershman et al.
NUCLEIC ACIDS RESEARCH (2008)
Sae2 is an endonuclease that processes hairpin DNA cooperatively with the Mre11/Rad50/Xrs2 complex
Bettina M. Lengsfeld et al.
MOLECULAR CELL (2007)
A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription
Boris P. Belotserkovskii et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Transcription-induced CAG repeat contraction in human cells is mediated in part by transcription-coupled nucleotide excision repair
Yunfu Lin et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Chromosomal model for analysis of a long CTG/CAG tract stability in wild-type Escherichia coli and its nucleotide excision repair mutants
Sylwia T. Szwarocka et al.
CANADIAN JOURNAL OF MICROBIOLOGY (2007)
Expandable DNA repeats and human disease
Sergei M. Mirkin
NATURE (2007)
Deletion of the cruciform binding domain in CBP/14-3-3 displays reduced origin binding and initiation of DNA replication in budding yeast
Wafaa Yahyaoui et al.
BMC MOLECULAR BIOLOGY (2007)
G-quadruplexes in promoters throughout the human genome
Julian L. Huppert et al.
NUCLEIC ACIDS RESEARCH (2007)
SOS repair and DNA supercoiling influence the genetic stability of DNA triplet repeats in Escherichia coli
Marta Majchrzak et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Common fragile sites as targets for chromosome rearrangements
Martin F. Arlt et al.
DNA REPAIR (2006)
Palindrome-mediated chromosomal translocations in humans
Hiroki Kurahashi et al.
DNA REPAIR (2006)
The UvrD helicase and its modulation by the mismatch repair protein MutL
Steven W. Matson et al.
NUCLEIC ACIDS RESEARCH (2006)
High-resolution comparative mapping among man, cattle and mouse suggests a role for repeat sequences in mammalian genome evolution
Laurent Schibler et al.
BMC GENOMICS (2006)
Sticky DNA:: in vivo formation in E-coli and in vitro association of long GAA•TTC tracts to generate two independent supercoiled domains
Leslie S. Son et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences
Oleg Kikin et al.
NUCLEIC ACIDS RESEARCH (2006)
Targeting oncogenes to improve breast cancer chemotherapy
LA Christensen et al.
CANCER RESEARCH (2006)
Z-DNA-forming sequences generate large-scale deletions in mammalian cells
GL Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Transcription promotes contraction of CAG repeat tracts in human cells
YF Lin et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)
Common fragile sites, extremely large genes, neural development and cancer
DI Smith et al.
CANCER LETTERS (2006)
(CAG)n-hairpin DNA binds to Msh2-Msh3 and changes properties of mismatch recognition
BAL Owen et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)
Slipped (CTG)•(CAG) repeats can be correctly repaired, escape repair or undergo error-prone repair
GB Panigrahi et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)
Double-strand break formation by the RAG complex at the bcl-2 major breakpoint region and at other non-B DNA structures in vitro
SC Raghavan et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
Interplay between human high mobility group protein 1 and replication protein A on psoralen-cross-linked DNA
MC Reddy et al.
BIOCHEMISTRY (2005)
MutSα binds to and promotes synapsis of transcriptionally activated immunoglobulin switch regions
ED Larson et al.
CURRENT BIOLOGY (2005)
A novel recombination pathway initiated by the Mre11/Rad50/Nbs1 complex eliminates palindromes during meiosis in Schizosaccharomyces pombe
JA Farah et al.
GENETICS (2005)
A PKR-like eukaryotic initiation factor 2α kinase from zebrafish contains Z-DNA binding domains instead of dsRNA binding domains
S Rothenburg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Rad51-dependent DNA structures accumulate at damaged replication forks in sgs1 mutants defective in the yeast ortholog of BLM RecQ helicase
G Liberi et al.
GENES & DEVELOPMENT (2005)
Human XPC-hHR23B interacts with XPA-RPA in the recognition of triplex-directed psoralen DNA interstrand crosslinks
BS Thoma et al.
NUCLEIC ACIDS RESEARCH (2005)
Modulation of ADAR1 editing activity by Z-RNA in vitro
M Koeris et al.
NUCLEIC ACIDS RESEARCH (2005)
Saccharomyces cerevisiae Mre11 is a high-affinity G4 DNA-binding protein and a G-rich DNA-specific endonuclease: implications for replication of telomeric DNA
G Ghosal et al.
NUCLEIC ACIDS RESEARCH (2005)
Evidence that vaccinia virulence factor ER binds to Z-DNA in vivo:: Implications for development of a therapy for poxvirus infection
YG Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Length-dependent structure formation in Friedreich ataxia (GAA)n•(TTC)n repeats at neutral pH
VN Potaman et al.
NUCLEIC ACIDS RESEARCH (2004)
Positive correlation between DNA polymerase α-primase pausing and mutagenesis within polypyrimidine/polypurine microsatellite sequences
SE Hile et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells
GL Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Expanded CAG repeats activate the DNA damage checkpoint pathway
M Lahiri et al.
MOLECULAR CELL (2004)
Microsatellites: Simple sequences with complex evolution
H Ellegren
NATURE REVIEWS GENETICS (2004)
Z-DNA: the long road to biological function
A Rich et al.
NATURE REVIEWS GENETICS (2003)
Abundant gene conversion between arms of palindromes in human and ape Y chromosomes
S Rozen et al.
NATURE (2003)
Human gene mutation database (HGMD®):: 2003 update
PD Stenson et al.
HUMAN MUTATION (2003)
CTG repeat instability and size variation timing in DNA repair-deficient mice
C Savouret et al.
EMBO JOURNAL (2003)
Translocation and gross deletion breakpolints in human inherited disease and cancer I: Nucleotide composition and recomblination-assocliated motifs
SS Abeysinghe et al.
HUMAN MUTATION (2003)
Sticky DNA:: Effect of the polypurine•polypyrimidine sequence
AA Vetcher et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Molecular understanding of aluminum-induced topological changes in (CCG)12 triplet repeats:: relevance to neurological disorders
KS Latha et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2002)
Evidence of cis-acting factors in replication-mediated trinucleotide repeat instability in primate cells
JD Cleary et al.
NATURE GENETICS (2002)
Human XPA and RPA DNA repair proteins participate in specific recognition of triplex-induced helical distortions
KM Vasquez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
A new peculiar DNA structure: NMR solution structure of a DNA kissing complex
F Barbault et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2002)
Somatic expansion behaviour of the (CTG)n repeat in myotonic dystrophy knock-in mice is differentially affected by Msh3 and Msh6 mismatch-repair proteins
WJAA van den Broek et al.
HUMAN MOLECULAR GENETICS (2002)
Most meiotic CAG repeat tract-length alterations in yeast are SP011 dependent
C Jankowski et al.
MOLECULAR GENETICS AND GENOMICS (2002)
Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation
TD Schneider
NUCLEIC ACIDS RESEARCH (2001)
DNA structure-specific nuclease activities in the Saccharomyces cerevisiae Rad50•Mre11 complex
KM Trujillo et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins
T Schwartz et al.
NATURE STRUCTURAL BIOLOGY (2001)
Involvement of the nucleotide excision repair protein UvrA in instability of CAG-CTG repeat sequences in Escherichia coli
EA Oussatcheva et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
A polymorphic dinucleotide repeat in the rat nucleolin gene forms Z-DNA and inhibits promoter activity
S Rothenburg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
PKD1 unusual DNA conformations are recognized by nucleotide excision repair
A Bacolla et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Direct DNA binding by Brca1
TT Paull et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Selective recognition of pyrimidine motif triplexes by a protein encoded by the bacterial transposon Tn7
JE Rao et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Repair bias of large loop mismatches during recombination in mammalian cells depends on loop length and structure
CA Bill et al.
MUTATION RESEARCH-DNA REPAIR (2001)
Palindromic but not G-rich sequences are targets of class switch recombination
J Tashiro et al.
INTERNATIONAL IMMUNOLOGY (2001)
Mouse tissue culture models of unstable triplet repeats:: in vitro selection for larger alleles, mutational expansion bias and tissue specificity, but no association with cell division rates
M Gomes-Pereira et al.
HUMAN MOLECULAR GENETICS (2001)
Specific mutations induced by triplex-forming oligonucleotides in mice
KM Vasquez et al.
SCIENCE (2000)
DNA polymerase III proofreading mutants enhance the expansion and deletion of triplet repeat sequences in Escherichia coli
RR Iyer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
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