4.8 Article

CODA: quantitative 3D reconstruction of large tissues at cellular resolution

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Oncology

Prostate Cancer Risk Stratification via Nondestructive 3D Pathology with Deep Learning-Assisted Gland Analysis

Weisi Xie et al.

Summary: This study presents a workflow for nondestructive 3D pathology analysis of prostate biopsies, which improves risk assessment and treatment decisions for prostate cancer patients. The results support the use of computational 3D pathology for guiding clinical management.

CANCER RESEARCH (2022)

Article Biochemical Research Methods

Antibody stabilization for thermally accelerated deep immunostaining

Hei Ming Lai et al.

Summary: Researchers have developed a chemical approach to stabilize antibodies against denaturation, enabling flexible applications and improved tissue penetration. This method shows promise for deep immunostaining and has broad compatibility with tissue processing methods.

NATURE METHODS (2022)

Article Oncology

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment

Laura Kuett et al.

Summary: The article introduces a new imaging mass cytometry technology that allows for multiplexed tissue analysis in three dimensions. The study shows that this technology can reveal the complexity of cells and microenvironments, as well as phenomena occurring in three-dimensional space, such as tumor cell invasion.

NATURE CANCER (2022)

Article Oncology

Cancer Statistics, 2021

Rebecca L. Siegel et al.

Summary: Every year, the American Cancer Society projects the numbers of new cancer cases and deaths in the United States, with the latest data showing a significant decline in lung cancer mortality, while prostate cancer mortality has plateaued and breast and colorectal cancer mortality have slowed. Improvements in treatment have accelerated progress against lung cancer, leading to a record drop in overall cancer mortality.

CA-A CANCER JOURNAL FOR CLINICIANS (2021)

Article Engineering, Biomedical

Harnessing non-destructive 3D pathology

Jonathan T. C. Liu et al.

Summary: High-throughput slide-free three-dimensional pathological analysis methods offer the potential to modernize traditional workflows and improve diagnostic performance, by enabling the interrogation of larger tissue samples and enhanced quantitative analyses. However, the generation of feature-rich datasets poses challenges for data management and computer-aided analysis.

NATURE BIOMEDICAL ENGINEERING (2021)

Article Endocrinology & Metabolism

Characterization of tumor-associated macrophages in prostate cancer transgenic mouse models

Amber E. de Groot et al.

Summary: In both Hi-Myc and TRAMP models, macrophages exhibit a more pro-tumor phenotype in higher histological grade tumors and older prostate tissue during tumor development and progression. However, Hi-Myc tumors show increased macrophage density while TRAMP tumors show decreased macrophage density compared to age-matched wild type mice, suggesting that Hi-Myc model may be more suitable for studying TAMs and TME-targeted therapies.

PROSTATE (2021)

Article Biochemistry & Molecular Biology

Cellular and Molecular Probing of Intact Human Organs

Shan Zhao et al.

Article Multidisciplinary Sciences

Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues

Etsuo A. Susaki et al.

NATURE COMMUNICATIONS (2020)

Article Oncology

Three-dimensional analysis of extrahepatic cholangiocarcinoma and tumor budding

Tadashi Yoshizawa et al.

JOURNAL OF PATHOLOGY (2020)

Article Oncology

Histological3Dreconstruction andin vivolineage tracing of the human endometrium

Nicola Tempest et al.

JOURNAL OF PATHOLOGY (2020)

Article Multidisciplinary Sciences

Mesoscopic 3D imaging of pancreatic cancer and Langerhans islets based on tissue autofluorescence

Max Hahn et al.

SCIENTIFIC REPORTS (2020)

Article Multidisciplinary Sciences

VISTA: VIsual Semantic Tissue Analysis for pancreatic disease quantification in murine cohorts

Luke Ternes et al.

SCIENTIFIC REPORTS (2020)

Article Gastroenterology & Hepatology

Early Detection of Pancreatic Cancer: Opportunities and Challenges

Aatur D. Singhi et al.

GASTROENTEROLOGY (2019)

Article Oncology

Why is pancreatic cancer so deadly? The pathologist's view

Ralph H. Hruban et al.

JOURNAL OF PATHOLOGY (2019)

Article Multidisciplinary Sciences

Tissue curvature and apicobasal mechanical tension imbalance instruct cancer morphogenesis

Hendrik A. Messal et al.

NATURE (2019)

Review Surgery

Meta-analysis of recurrence pattern after resection for pancreatic cancer

M. Tanaka et al.

BRITISH JOURNAL OF SURGERY (2019)

Review Medicine, Research & Experimental

The role of collagen in cancer: from bench to bedside

Shuaishuai Xu et al.

JOURNAL OF TRANSLATIONAL MEDICINE (2019)

Article Computer Science, Artificial Intelligence

Hover-Net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images

Simon Graham et al.

MEDICAL IMAGE ANALYSIS (2019)

Proceedings Paper Computer Science, Artificial Intelligence

HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images

Lyndon Chan et al.

2019 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION (ICCV 2019) (2019)

Article Biochemical Research Methods

Comparative analysis of tissue reconstruction algorithms for 3D histology

Kimmo Kartasalo et al.

BIOINFORMATICS (2018)

Review Oncology

Organoids in cancer research

Jarno Drost et al.

NATURE REVIEWS CANCER (2018)

Article Multidisciplinary Sciences

Heterogeneity of macrophage infiltration and therapeutic response in lung carcinoma revealed by 3D organ imaging

Michael F. Cuccarese et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

QuPath: Open source software for digital pathology image analysis

Peter Bankhead et al.

SCIENTIFIC REPORTS (2017)

Article Biochemistry & Molecular Biology

Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition

Judith M. Lotz et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2017)

Review Biochemistry & Molecular Biology

Clarifying Tissue Clearing

Douglas S. Richardson et al.

Article Biochemistry & Molecular Biology

Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing

Bin Yang et al.

Article Oncology

Influence of Perineural Invasion on Survival and Recurrence in Patients with Resected Pancreatic Cancer

Jun-Feng Zhang et al.

ASIAN PACIFIC JOURNAL OF CANCER PREVENTION (2013)

Article Multidisciplinary Sciences

Structural and molecular interrogation of intact biological systems

Kwanghun Chung et al.

NATURE (2013)

Article Pathology

Toward Routine Use of 3D Histopathology as a Research Tool

Nicholas Roberts et al.

AMERICAN JOURNAL OF PATHOLOGY (2012)

Article Gastroenterology & Hepatology

Detection of pancreatic cancer tumours and precursor lesions by cathepsin E activity in mouse models

Zobeida Cruz-Monserrate et al.

Article Biochemical Research Methods

High-throughput ballistic injection nanorheology to measure cell mechanics

Pei-Hsun Wu et al.

NATURE PROTOCOLS (2012)

Article Medicine, Research & Experimental

β-catenin blocks Kras-dependent reprogramming of acini into pancreatic cancer precursor lesions in mice

John P. Morris et al.

JOURNAL OF CLINICAL INVESTIGATION (2010)

Review Oncology

Perineural Invasion in Cancer A Review of the Literature

Catherine Liebig et al.

CANCER (2009)

Article Gastroenterology & Hepatology

Screening for early pancreatic neoplasia in high-risk individuals: A prospective controlled study

Marcia Irene Canto et al.

CLINICAL GASTROENTEROLOGY AND HEPATOLOGY (2006)

Article Medicine, General & Internal

Physical activity, obesity, height, and the risk of pancreatic cancer

DS Michaud et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2001)

Article Biochemical Research Methods

Quantitative estimation of 3-D fiber course in gross histological sections of the human brain using polarized light

H Axer et al.

JOURNAL OF NEUROSCIENCE METHODS (2001)