Probing Heterogeneous Folding Pathways of DNA Origami Self-Assembly at the Molecular Level with Atomic Force Microscopy

A myriad of DNA origami nanostructures have been demonstrated in various intriguing applications. In pursuit of facile yet high-yield synthesis, the mechanisms underlying DNA origami folding need to be resolved. Here, we visualize the folding processes of several multidomain DNA origami structures under ambient annealing conditions in solution using atomic force microscopy with submolecular resolution. We reveal the coexistence of diverse transitional structures that might result in the same prescribed products. Based on the experimental observations and the simulation of the energy landscapes, we propose the heterogeneity of the folding pathways of multidomain DNA origami structures. Our findings may contribute to understanding the high-yield folding mechanism of DNA origami.

Automated summary

In this study, the folding processes of several multidomain DNA origami structures were visualized using atomic force microscopy under ambient annealing conditions in solution, revealing the coexistence of diverse transitional structures that might result in the same prescribed products. Based on experimental observations and energy landscape simulations, the heterogeneity of the folding pathways of multidomain DNA origami structures was proposed.