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Jani Heino et al.
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Aloisie Poulickova et al.
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Marc W. Cadotte et al.
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raxmlGUI: a graphical front-end for RAxML
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Distance Decay of Similarity in Neotropical Diatom Communities
Carlos E. Wetzel et al.
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Tadeu Siqueira et al.
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Bayesian community-wide culture-independent microbial source tracking
Dan Knights et al.
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Simon A. Berger et al.
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Picante: R tools for integrating phylogenies and ecology
Steven W. Kembel et al.
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Jurg B. Logue et al.
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J Tison et al.
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