相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Genomic revolution of US weedy rice in response to 21st century agricultural technologies
Marshall J. Wedger et al.
COMMUNICATIONS BIOLOGY (2022)
Genomic divergence during feralization reveals both conserved and distinct mechanisms of parallel weediness evolution
Toshiyuki Imaizumi et al.
COMMUNICATIONS BIOLOGY (2021)
Twelve years of SAMtools and BCFtools
Petr Danecek et al.
GIGASCIENCE (2021)
The genomic consequences of hybridization
Benjamin M. Moran et al.
ELIFE (2021)
Translation of continuous artificial selection on phenotype into genotype during rice breeding programs
Kenji Fujino et al.
BREEDING SCIENCE (2021)
Assembling seed dormancy genes into a system identified their effects on seedbank longevity in weedy rice
Wirat Pipatpongpinyo et al.
HEREDITY (2020)
Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs
Daniel R. Matute et al.
GENETICS (2020)
Whole-Genome Sequencing of the NARO World Rice Core Collection (WRC) as the Basis for Diversity and Association Studies
N. Tanaka et al.
PLANT AND CELL PHYSIOLOGY (2020)
Recent hybrids recapitulate ancient hybrid outcomes
Samridhi Chaturvedi et al.
NATURE COMMUNICATIONS (2020)
Massive haplotypes underlie ecotypic differentiation in sunflowers
Marco Todesco et al.
NATURE (2020)
Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.)
Chetphilin Suriyasak et al.
SCIENTIFIC REPORTS (2020)
Diverse genetic mechanisms underlie worldwide convergent rice feralization
Jie Qiu et al.
GENOME BIOLOGY (2020)
Call of the wild rice: Oryza rufipogon shapes weedy rice evolution in Southeast Asia
Cynthia C. Vigueira et al.
EVOLUTIONARY APPLICATIONS (2019)
Population Genomic Analysis and De Novo Assembly Reveal the Origin of Weedy Rice as an Evolutionary Game
Jian Sun et al.
MOLECULAR PLANT (2019)
Hybridization speeds adaptive evolution in an eight-year field experiment
Nora Mitchell et al.
SCIENTIFIC REPORTS (2019)
When West Meets East: The Origins and Spread of Weedy Rice Between Continental and Island Southeast Asia
Ting Xiang Neik et al.
G3-GENES GENOMES GENETICS (2019)
Weedy rice represents an emerging threat to transplanted rice production systems in Japan
Toshiyuki Imaizumi
WEED BIOLOGY AND MANAGEMENT (2018)
Molecular Mechanisms Underlying Abscisic Acid/Gibberellin Balance in the Control of Seed Dormancy and Germination in Cereals
Pham A. Tuan et al.
FRONTIERS IN PLANT SCIENCE (2018)
A One-Penny Imputed Genome from Next-Generation Reference Panels
Brian L. Browning et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2018)
Parallel selection on a dormancy gene during domestication of crops from multiple families
Min Wang et al.
NATURE GENETICS (2018)
Inferring Population Structure and Admixture Proportions in Low-Depth NGS Data
Jonas Meisner et al.
GENETICS (2018)
Dormancy-Linked Population Structure of Weedy Rice (Oryza sp.)
Te-Ming Tseng et al.
WEED SCIENCE (2018)
REHH 2.0: a reimplementation of the R package REHH to detect positive selection from haplotype structure
Mathieu Gautier et al.
MOLECULAR ECOLOGY RESOURCES (2017)
All roads lead to weediness: Patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza
Zhongyun Huang et al.
MOLECULAR ECOLOGY (2017)
Signatures of adaptation in the weedy rice genome
Lin-Feng Li et al.
NATURE GENETICS (2017)
Genomic variation associated with local adaptation of weedy rice during de-domestication
Jie Qiu et al.
NATURE COMMUNICATIONS (2017)
Multiple paths to similar germination behavior in Arabidopsis thaliana
Liana T. Burghardt et al.
NEW PHYTOLOGIST (2016)
Ancient hybridization and genomic stabilization in a swordtail fish
Molly Schumer et al.
MOLECULAR ECOLOGY (2016)
Both Hd1 and Ehd1 are important for artificial selection of flowering time in cultivated rice
Fu-Jin Wei et al.
PLANT SCIENCE (2016)
Early life stages contribute strongly to local adaptation in Arabidopsis thaliana
Froukje M. Postma et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Fitting Linear Mixed-Effects Models Using lme4
Douglas Bates et al.
JOURNAL OF STATISTICAL SOFTWARE (2015)
Dormancy in cereals (not too much, not so little): about the mechanisms behind this trait
Maria V. Rodriguez et al.
SEED SCIENCE RESEARCH (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
ANGSD: Analysis of Next Generation Sequencing Data
Thorfinn Sand Korneliussen et al.
BMC BIOINFORMATICS (2014)
On the importance of balancing selection in plants
Lynda F. Delph et al.
NEW PHYTOLOGIST (2014)
Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia
Beng-Kah Song et al.
MOLECULAR ECOLOGY (2014)
The Impact of Herbicide-Resistant Rice Technology on Phenotypic Diversity and Population Structure of United States Weedy Rice
Nilda Roma Burgos et al.
PLANT PHYSIOLOGY (2014)
Genome re-sequencing suggested a weedy rice origin from domesticated indica-japonica hybridization: a case study from southern China
Jie Qiu et al.
PLANTA (2014)
Genome-Wide DNA Polymorphisms in Seven Rice Cultivars of Temperate and Tropical Japonica Groups
Yuko Arai-Kichise et al.
PLOS ONE (2014)
Effects of genotypic and phenotypic variation on establishment are important for conservation, invasion, and infection biology
Anders Forsman
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Maternal temperature history activates Flowering Locus T in fruits to control progeny dormancy according to time of year
Min Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Estimating Individual Admixture Proportions from Next Generation Sequencing Data
Line Skotte et al.
GENETICS (2013)
Inter- and intrapopulation variation in dormancy of Oryza sativa (weedy red rice) and allelic variation in dormancy-linked loci
T. M. Tseng et al.
WEED RESEARCH (2013)
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Yoshihiro Kawahara et al.
RICE (2013)
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
Xun Xu et al.
NATURE BIOTECHNOLOGY (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Association Between Seed Dormancy and Pericarp Color Is Controlled by a Pleiotropic Gene That Regulates Abscisic Acid and Flavonoid Synthesis in Weedy Red Rice
Xing-You Gu et al.
GENETICS (2011)
Discovery of Genome-Wide DNA Polymorphisms in a Landrace Cultivar of Japonica Rice by Whole-Genome Sequencing
Yuko Arai-Kichise et al.
PLANT AND CELL PHYSIOLOGY (2011)
Germination, Postgermination Adaptation, and Species Ecological Ranges
Kathleen Donohue et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 41 (2010)
Fast and accurate long-read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2010)
Oryzabase: an integrated information resource for rice science
Yukiko Yamazaki et al.
BREEDING SCIENCE (2010)
Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways
Leonie Bentsink et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
Kazuhiko Sugimoto et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Fast model-based estimation of ancestry in unrelated individuals
David H. Alexander et al.
GENOME RESEARCH (2009)
Glucose-Induced Delay of Seed Germination in Rice is Mediated by the Suppression of ABA Catabolism Rather Than an Enhancement of ABA Biosynthesis
Guohui Zhu et al.
PLANT AND CELL PHYSIOLOGY (2009)
Genome-wide detection and characterization of positive selection in human populations
Pardis C. Sabeti et al.
NATURE (2007)
Hybridization and the colonization of novel habitats by annual sunflowers
Loren H. Rieseberg et al.
GENETICA (2007)
A map of recent positive selection in the human genome (vol 4, pg 154, 2006)
BF Voight et al.
PLOS BIOLOGY (2006)
A map of recent positive selection in the human genome
BF Voight et al.
PLOS BIOLOGY (2006)
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
G Evanno et al.
MOLECULAR ECOLOGY (2005)
Origin of weedy rice grown in Bhutan and the force of genetic diversity
R Ishikawa et al.
GENETIC RESOURCES AND CROP EVOLUTION (2005)
Seed dormancy imposed by covering tissues interrelates to shattering and seed morphological characteristics in weedy rice
XY Gu et al.
CROP SCIENCE (2005)