☆ 4.7 Review

Bioprospecting and Challenges of Plant Microbiome Research for Sustainable Agriculture, a Review on Soybean Endophytic Bacteria

MICROBIAL ECOLOGY (2023)

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Article Microbiology

Phyllosphere microbiome: Diversity and functions

Iqra Bashir et al.

Summary: The phyllosphere, as the largest and unique microbial habitat on Earth, harbors diverse microbial communities that play important roles in influencing plant hosts and surrounding environments. Significant progress has been made in recent years in understanding the diversity and functional interactions of phyllosphere microbiology, which is vital for developing strategies to manipulate these beneficial microbial communities.

MICROBIOLOGICAL RESEARCH (2022)

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Article Microbiology

Seed inhabiting bacterial endophytes of maize promote seedling establishment and provide protection against fungal disease

Gaurav Pal et al.

Summary: The endophytic microbiome of maize seeds plays a significant role in promoting the growth of seedlings and protecting them from fungal pathogens. These bacteria have growth promotion attributes, antagonistic activity against phytopathogenic fungi, and the presence of antibacterial genes.

MICROBIOLOGICAL RESEARCH (2022)

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Article Soil Science

Divergent belowground carbon allocation patterns of winter wheat shape rhizosphere microbial communities and nitrogen cycling activities

Courtland Kelly et al.

Summary: The study found that different wheat genotypes exhibited varying patterns of root C allocation, influencing nitrogen cycling. Thicker roots released more C into soil, enhancing nitrogen mineralization and microbial biomass, which in turn increased nitrogen cycling enzyme activity and residue nitrogen uptake by wheat. Microbial community structure was strongly correlated with root C allocation patterns, with certain genera showing strong relationships with root C deposition and nitrogen uptake.

SOIL BIOLOGY & BIOCHEMISTRY (2022)

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Article Microbiology

Molecular and Biochemical Characterization, Antimicrobial Activity, Stress Tolerance, and Plant Growth-Promoting Effect of Endophytic Bacteria Isolated from Wheat Varieties

Dawood Shah et al.

Summary: Endophytic bacteria isolated from Pakistani wheat seeds showed beneficial characteristics such as nitrogen fixation, phosphorus solubilization, indole-3-acetic acid production, and antimicrobial activity. The GI-6 strain exhibited strong salt tolerance and growth-promoting effects on wheat plants.

MICROORGANISMS (2022)

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Article Soil Science

Co-inoculation of indigenous Pseudomonas oryzihabitans and Bradyrhizobium sp. modulates the growth, symbiotic efficacy, nutrient acquisition, and grain yield of soybean

Kailash Chand Kumawat et al.

Summary: Soil microbes, such as Bradyrhizobium sp. LSBR-3 and Pseudomonas oryzihabitans LSE-3, were found to improve the symbiosis, nutrient accumulation, and yield of soybean. Dual inoculation with LSBR-3 and LSE-3 resulted in higher plant growth-promoting traits and significantly increased nodulation, phosphatase and dehydrogenase activities, and nutrient uptake in soybean.

PEDOSPHERE (2022)

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Article Agronomy

Effect of endophytic bacterium, Stenotrophomonas maltophilia JVB5 on sunflowers

Bartholomew Saanu Adeleke et al.

Summary: Identifiable endophytic bacteria with plant growth-promoting traits are crucial for sustainable agriculture. This study focuses on exploring the versatility and potential of sunflower-associated bacteria as bioinoculants. The whole-genome analysis of Stenotrophomonas maltophilia JVB5 revealed the presence of genes involved in bacterial colonization, antibiosis, and plant growth promotion. Upon inoculation, S. maltophilia JVB5 efficiently colonized sunflower roots and significantly improved plant growth.

PLANT PROTECTION SCIENCE (2022)

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Review Environmental Sciences

Role of Endophytes in Abiotic Stress Tolerance: With Special Emphasis on Serendipita indica

Jaagriti Tyagi et al.

Summary: Abiotic stresses in soil, such as high salinity, temperature, drought, heavy metals, and nutrient imbalances, have negative effects on plant growth and crop productivity. Conventional methods of biomass production in agriculture are not sustainable and often harm the ecosystem. The use of fungal endophytes, such as Serendipita indica, can help increase plant growth and improve stress tolerance in crops. This review emphasizes the importance of fungal endophyte colonization in plant growth management under abiotic stress conditions.

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH (2022)

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Article Biotechnology & Applied Microbiology

Meta-omics of endophytic microbes in agricultural biotechnology

Bartholomew Saanu Adeleke et al.

Summary: Endophytic studies are gaining popularity in microbial ecology due to their importance in plant nutrition and stress tolerance. The current research focuses on the abundance, diversity, and functional role of endophytic bacteria and fungi in major crops, while meta-omics approaches provide a promising platform for exploring and harnessing the potential of endophytic bioproducts in agriculture and industry.

BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY (2022)

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Article Biotechnology & Applied Microbiology

Root nodules of legumes: A suitable ecological niche for isolating non- rhizobial bacteria with biotechnological potential in agriculture

Hassan Etesami

Summary: Non-rhizobial bacteria in legume root nodules have multiple plant growth-promoting characteristics and can synergistically enhance plant growth and yield when co-inoculated with rhizobial bacteria.

CURRENT RESEARCH IN BIOTECHNOLOGY (2022)

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Article Environmental Sciences

Biomedical Potential of Astaxanthin from Novel Endophytic Pigment Producing Bacteria Pontibacter korlensis AG6

Abirami Pachaiyappan et al.

Summary: The study focused on identifying and studying the biological properties of pigments from marine endophytic bacteria associated with bivalves, revealing significant antibacterial and free radical scavenging properties, as well as potential cytotoxic effects on cancer cells. The findings suggest that these active compounds could serve as a source for new therapeutic leads, highlighting the importance of diverse relationships between organisms and their microbial guests.

WASTE AND BIOMASS VALORIZATION (2021)

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Article Biology

Endophytic Bacteria Bacillus subtilis, Isolated from Zea mays, as Potential Biocontrol Agent against Botrytis cinerea

Hernando Jose Bolivar-Anillo et al.

Summary: The study demonstrates that endophytic bacteria isolated from maize plants exhibit significant antagonistic effects against Botrytis cinerea and have the potential to promote plant growth.

BIOLOGY-BASEL (2021)

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Article Biotechnology & Applied Microbiology

Isolation and screening of stress-resistant endophytic fungus strains from wild and cultivated soybeans in cold region of China

Jia-lei Xiao et al.

Summary: This study focused on large-scale screening and isolation of endophytic fungi from wild and cultivated soybeans in cold regions of China. A total of 302 strains were isolated, showing distribution in different plant parts and resistance to abiotic stresses. 11 strains exhibited high-performance synthesis of secondary metabolites.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2021)

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Review Soil Science

Seed associated bacterial and fungal endophytes: Diversity, life cycle, transmission, and application potential

Tayyaba Samreen et al.

Summary: The interaction between seed-associated microbes and host plants plays a significant role in promoting plant growth and can be crucial for the sustainability of agriculture. The potential of seed microbiome research is immense, yet often overlooked compared to other plant microbial studies. The complex life cycle and transmission dynamics of seed-associated microbes provide ample research opportunities for exploring their impact on plant health and development.

APPLIED SOIL ECOLOGY (2021)

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Article Soil Science

Application of N2-fixing Paenibacillus triticisoli BJ-18 changes the compositions and functions of the bacterial, diazotrophic, and fungal microbiomes in the rhizosphere and root/shoot endosphere of wheat under field conditions

Yongbin Li et al.

Summary: Inoculation of the diazotroph Paenibacillus triticisoli BJ-18 significantly influenced the composition and function of microbial communities in the rhizosphere and root/shoot endosphere of winter wheat, leading to increased soil nutrient content and wheat yield. The inoculation treatment increased bacterial diversity while decreasing fungal and endospheric bacterial abundances.

BIOLOGY AND FERTILITY OF SOILS (2021)

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Article Microbiology

Experimental evidence of microbial inheritance in plants and transmission routes from seed to phyllosphere and root

Ahmed Abdelfattah et al.

Summary: The study found that the seed microbiome is diverse, with the microbial composition in leaves and embryos showing similarity, while roots and pericarps have less diverse and distinct microbial communities. The establishment of root and leaf communities involves inheritance, niche differentiation, and different transmission routes.

ENVIRONMENTAL MICROBIOLOGY (2021)

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Article Multidisciplinary Sciences

The root endophytic bacterial community of Ricinus communis L. resembles the seeds community more than the rhizosphere bacteria independent of soil water content

Stephanie E. Hereira-Pacheco et al.

Summary: This study investigated the impact of varying soil water content on the bacterial community in the rhizosphere and roots of Ricinus communis L. It was found that water content had limited effect on the bacterial community structure, while the presence of R. communis significantly influenced the bacterial community composition.

SCIENTIFIC REPORTS (2021)

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Article Environmental Sciences

Bacterial Root Endophytes: Characterization of Their Competence and Plant Growth Promotion in Soybean (Glycine max (L.) Merr.) under Drought Stress

Anamika Dubey et al.

Summary: This study isolated bacterial endophytes from soybean root tissues with plant growth-promoting traits and drought tolerance, which significantly improved soybean seedling growth by influencing several biochemical changes. Among these endophytes, AKAD A1-16 showed the best performance, potentially serving as a tool to mitigate the effect of drought and fungal diseases on early seedling growth of soybean.

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2021)

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Article Microbiology

Whole Genome Sequencing and Root Colonization Studies Reveal Novel Insights in the Biocontrol Potential and Growth Promotion by Bacillus subtilis MBI 600 on Cucumber

Anastasios Samaras et al.

Summary: The study demonstrates that Bacillus spp. MBI 600 is a gram-positive bacterium capable of promoting plant growth and antagonizing different plant pathogens. Through genomic analysis and taxonomic characterization, it was confirmed that the strain plays a crucial role in soil nutrient utilization and exhibits strong potential in root colonization ability.

FRONTIERS IN MICROBIOLOGY (2021)

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Article Microbiology

Unraveling Mechanisms and Impact of Microbial Recruitment on Oilseed Rape (Brassica napus L.) and the Rhizosphere Mediated by Plant Growth-Promoting Rhizobacteria

Ying Liu et al.

Summary: The study found that different PGPR strains have significant effects on nitrogen content, rhizobacterial community composition, and the conversion of organic nitrogen to inorganic nitrogen in oilseed rape plants. Initial colonization by PGPR has a lasting impact on rhizobacterial community composition, and network analysis shows that PGPR have species-dependent effects on niche competition in the rhizosphere.

MICROORGANISMS (2021)

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Article Microbiology

Amycolatopsis pittospori sp. nov., an endophytic actinobacterium isolated from native apricot tree and genome mining revealed the biosynthesis potential as antibiotic producer and plant growth promoter

Onuma Kaewkla et al.

Summary: A new endophytic actinobacterium strain, named PIP199(T), was isolated and identified as a new member of the genus Amycolatopsis. The strain showed differences in morphology, physiological characteristics, and genetic markers compared to closely related species, leading to the proposal of a new species classification.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2021)

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Article Environmental Sciences

Bioaugmentation with copper tolerant endophyte Pseudomonas lurida strain EOO26 for improved plant growth and copper phytoremediation by Helianthus annuus

Adarsh Kumar et al.

Summary: The Cu-tolerant PGP endophytes from roots of Odontarrhena obovata showed efficient remediation of Cu contamination and exhibited promising potential to work effectively under various abiotic stress conditions. Through plant growth experiments, it was found that the endophytes significantly increased the growth of roots and shoots of plants, as well as enhanced the uptake of Cu by the plants.

CHEMOSPHERE (2021)

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Review Microbiology

Rhizosphere Microbiome Cooperations: Strategies for Sustainable Crop Production

Olubukola O. Babalola et al.

Summary: Interactions between microorganisms and host plants in the rhizosphere play a crucial role in plant growth, but their full potential has not been realized. Understanding microbial interactions and factors affecting their assembly is essential to harness the cooperative benefits of various microbial communities for sustainable crop production.

CURRENT MICROBIOLOGY (2021)

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Article Microbiology

Bacillus siamensis CNE6-a multifaceted plant growth promoting endophyte of Cicer arietinum L. having broad spectrum antifungal activities and host colonizing potential

Pralay Shankar Gorai et al.

Summary: Exploration of endophytic bacteria with multiple plant growth promoting attributes is an eco-friendly and cost-effective alternative to agricultural chemicals for increasing crop productivity. One potent endophytic Bacillus siamensis strain CNE6 isolated from healthy chickpea plants exhibited various PGP properties like phosphate solubilization, IAA production, nitrogen fixation, and showed significant antagonistic activity against plant pathogenic fungi. This unique endophytic isolate has the potential to improve the productivity of chickpea plants by enhancing growth and development.

MICROBIOLOGICAL RESEARCH (2021)

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Article Biochemistry & Molecular Biology

Molecular Identification of Endophytic Bacteria in Leucojum aestivum In Vitro Culture, NMR-Based Metabolomics Study and LC-MS Analysis Leading to Potential Amaryllidaceae Alkaloid Production

Rosella Spina et al.

Summary: The study found that Bacillus sp. isolated from Leucojum aestivum bulblets can synthesize primary and specialized metabolites in common with the L. aestivum plant, including important alkaloids such as Amaryllidaceae alkaloids.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

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Article Biotechnology & Applied Microbiology

Biotechnological application of plant growth-promoting endophytic bacteria isolated from halophytic plants to ameliorate salinity tolerance of Vicia faba L.

Hany A. M. Mahgoub et al.

Summary: Salinity is a major global issue affecting crop production, and endophytic bacteria can help improve plant salt tolerance. This study identified various endophytic strains with plant growth-promoting activities and found that inoculating bean seeds with specific strains mitigated the harmful effects of soil salinity, enhancing plant growth and nutrient accumulation. The co-inoculation of Bacillus subtilis and Bacillus thuringiensis showed the greatest potential in alleviating the negative impact of soil salinity stress, offering a bio-approach for reclaiming salinity-stressed soils.

PLANT BIOTECHNOLOGY REPORTS (2021)

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Review Environmental Sciences

Review of crop-specific tolerance limits to acidity, salinity, and sodicity for seventeen cereal, pulse, and oilseed crops common to rainfed subtropical cropping systems

Kathryn L. Page et al.

Summary: Soil constraints globally limit crop water and nutrient extraction, leading to yield loss. This study aimed to compile published information on crop responses to acidic, saline, or sodic conditions to identify crops suitable for constrained areas in rainfed subtropical cropping systems. Results show that tolerance limits and rankings vary among crops, highlighting the need for further research to confirm their applicability.

LAND DEGRADATION & DEVELOPMENT (2021)

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Article Multidisciplinary Sciences

Plant growth promoting endophyte Burkholderia contaminans NZ antagonizes phytopathogen Macrophomina phaseolina through melanin synthesis and pyrrolnitrin inhibition

Nazia R. Zaman et al.

Summary: The endophytic bacterium Burkholderia contaminans NZ was found to promote plant growth and inhibit the growth of the phytopathogen M. phaseolina. Through various bioactive compounds and gene clusters, B. contaminans NZ appears to impair the melanin synthesis and other biochemical pathways of phytopathogens, exhibiting considerable fungistatic activity.

PLOS ONE (2021)

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Article Biotechnology & Applied Microbiology

Metagenomics of two gnotobiotically grown aromatic rice cultivars reveals genotype-dependent and tissue-specific colonization of endophytic bacterial communities attributing multiple plant growth promoting traits

Anagha Krishnamoorthy et al.

Summary: The study explored the taxonomic abundance and diversity of endophytic bacteria in different tissues of aromatic rice cultivars using NGS, revealing tissue-specific and genotype-dependent bacterial community distribution. Functional annotation based on bacterial OTUs showed the presence of PGP trait-related genes with variable relative abundance. The research suggests new insights on utilizing callus cultures for isolation of PGP endophytes in order to improve rice crop productivity.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2021)

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Article Multidisciplinary Sciences

Insufficient sampling constrains our characterization of plant microbiomes

Lorinda S. Bullington et al.

Summary: Different microbial sampling strategies were compared in this study to assess their impact on plant microbial community composition. The results indicate that current sampling practices poorly characterize diverse microbial groups, highlighting the need for increased sampling intensity to improve reproducibility and identify subtler patterns in microbial distributions.

SCIENTIFIC REPORTS (2021)

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Article Multidisciplinary Sciences

Bacterial and fungal endophyte communities in healthy and diseased oilseed rape and their potential for biocontrol of Sclerotinia and Phoma disease

C. S. Schmidt et al.

Summary: Phoma stem canker has a significant impact on endophyte communities in oilseed rape, affecting both fungal and bacterial endophytes. Dominant bacterial genera include Pseudomonas, Enterobacter, Serratia, Stenotrophomonas, Bacillus, and Staphylococcus, while fungal genera like Cladosporium, Botrytis, and Torula are dominant in healthy plants and Alternaria, Fusarium, and Basidiomycetes are exclusive to diseased plants.

SCIENTIFIC REPORTS (2021)

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Review Horticulture

Biotechnological overview of agriculturally important endophytic fungi

Bartholomew Saanu Adeleke et al.

Summary: The diverse aspects of biotechnology in endophytic studies involve the interactions between endophytes and plants, the synthesis of biomolecules, and the potential impact on plant growth, immunity, and protection from environmental stresses. Fungal endophytes play roles in nutrient acquisition, nitrogen fixation, and plant pathogen control, as well as contribute to plant growth through complex mechanisms. Metagenomic approaches provide insights into the structural diversity and functions of endophytes, which can be genetically manipulated for various agricultural and industrial applications.

HORTICULTURE ENVIRONMENT AND BIOTECHNOLOGY (2021)

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Review Biology

The Endophytic Microbiome as a Hotspot of Synergistic Interactions, with Prospects of Plant Growth Promotion

Udaya Kumar Vandana et al.

Summary: Endophytic bacteria are plant-associated bacteria that promote plant growth by inhibiting plant pathogens and producing secondary metabolites. Understanding the diversity of endophytic microbial communities and their interactions with host plants is crucial for their successful application in agriculture.

BIOLOGY-BASEL (2021)

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Article Agronomy

Groundnut (Arachis hypogaea) nodule Rhizobium and passenger endophytic bacterial cultivable diversity and their impact on plant growth promotion

R. Preyanga et al.

Summary: This study revealed the vast diversity of nodule endophytic bacteria in groundnut, and co-inoculation of native Rhizobium and nodule endophytes significantly improved plant growth.

RHIZOSPHERE (2021)

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Article Microbiology

Caulobacter endophyticus sp. nov., an endophytic bacterium harboring three lasso peptide biosynthetic gene clusters and producing indoleacetic acid isolated from maize root

Jun-lian Gao et al.

Summary: A novel bacterium belonging to the genus Caulobacter, capable of producing IAA, was isolated from maize roots in Beijing, China. The genome analysis revealed the presence of multiple biosynthetic gene clusters and IAA synthesis genes, leading to the proposal of Caulobacter endophyticus sp. nov. as a new species within the genus.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2021)

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Article Microbiology

LC-MS/MS-based profiling of bioactive metabolites of endophytic bacteria from Cannabis sativa and their anti-Phytophthora activity

Irum Iqrar et al.

Summary: The study identified endophytic bacteria from the rhizosphere of Cannabis sativa with strong antimicrobial activity against Phytophthora parasitica. These bacteria could potentially be used as biocontrol agents against plant diseases caused by Phytophthora.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2021)

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Article Integrative & Complementary Medicine

Contents of lobetyolin, syringin, and atractylolide III in Codonopsis pilosula are related to dynamic changes of endophytes under drought stress

Yichuan Liang et al.

Summary: The study found that under drought stress, the contents of pharmacological components and the diversity and composition of endophytes in different parts of Codonopsis pilosula changed. Certain endophytes participated in the accumulations of bioactive metabolites, providing scientific evidence for the development and application of microorganisms to improve the quality of traditional Chinese medicine.

CHINESE MEDICINE (2021)

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Article Microbiology

Peanut Endophytic Phosphate Solubilizing Bacteria Increase Growth and P Content of Soybean and Maize Plants

Cinthia Tamara Lucero et al.

Summary: This study explores the use of endophytic phosphate solubilizing bacteria to promote plant growth and increase phosphorus content. The results showed that the strains significantly enhanced the growth of maize and soybean plants, contributed P to their tissues, and increased the phosphate solubilizing capacity of the plant rhizosphere. The bacterial strains have the potential to be used in the formulation of biofertilizers for various crops in low-phosphorus agricultural soils.

CURRENT MICROBIOLOGY (2021)

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Article Environmental Sciences

ACC deaminase containing endophytic bacteria ameliorate salt stress in Pisum sativum through reduced oxidative damage and induction of antioxidative defense systems

Mahmoud R. Sofy et al.

Summary: This study focused on the role of isolated bacteria in alleviating the harmful effects of salt stress on plants. Results showed that treatment with endophytic bacteria significantly increased plant resistance to salt stress by enhancing enzymatic and non-enzymatic antioxidant defenses, osmolyte substances, and antioxidant enzyme gene expression. The use of endophytic bacteria also led to decreased Na+ accumulation and increased K+ uptake in plant tissues, ultimately improving salt tolerance in pea plants.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2021)

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Article Biotechnology & Applied Microbiology

Beneficial effects of endophytic Pantoea ananatis with ability to promote rice growth under saline stress

L. Lu et al.

Summary: The study aimed to isolate endophytic bacteria to promote rice growth under saline conditions. Pantoea ananatis D1 was found to improve salt tolerance of rice seedlings, with multiple plant growth-promoting traits. The application of P. ananatis D1 is a promising eco-friendly strategy to enhance plant tolerance towards abiotic stresses.

JOURNAL OF APPLIED MICROBIOLOGY (2021)

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Article Plant Sciences

Experimental evidence of strong relationships between soil microbial communities and plant germination

David J. Eldridge et al.

Summary: Plant-associated microbes play a crucial role in plant germination, with different plant species having their own germination microbiome. Positive interactions between plants and microbes were observed during germination, and there were significant correlations between microbes and plant functional traits. The study highlights the importance of soil microbial communities in driving plant germination and emphasizes the intimate relationship between plant and soil biodiversity.

JOURNAL OF ECOLOGY (2021)

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Article Agronomy

Growth Promotion of Rapeseed (Brassica napus L.) and Blackleg Disease (Leptosphaeria maculans) Suppression Mediated by Endophytic Bacteria

Nikola Lipkova et al.

Summary: The study screened endophytic bacteria isolated from rapeseed plants and found that most of the strains had plant growth promoting and antipathogen activities, particularly the potential to inhibit the growth of Leptosphaeria maculans. Bacterial strains with high antifungal activity showed great potential to reduce disease, making them promising candidates for field use.

AGRONOMY-BASEL (2021)

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Article Biochemistry & Molecular Biology

Phytohormones Producing Acinetobacter bouvetii P1 Mitigates Chromate Stress in Sunflower by Provoking Host Antioxidant Response

Muhammad Qadir et al.

Summary: This study investigated the bioremediation mechanism of a plant growth-promoting rhizobacteria P1, which was found to effectively alleviate Cr+6-induced oxidative stress in sunflowers and promote plant growth, suggesting its potential as an excellent bio-remediator in heavy metal-contaminated environments.

ANTIOXIDANTS (2021)

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Article Microbiology

Patterns in the Microbial Community of Salt-Tolerant Plants and the Functional Genes Associated with Salt Stress Alleviation

Yanfen Zheng et al.

Summary: This study investigates the microbiome and function signatures of salt-tolerant plants, revealing differences in bacterial communities and the importance of microbial function in enhancing plant adaptability to saline soil. Soil pH, electrical conductivity, and total nitrogen were identified as important driving factors for microbial and functional gene selection. Root exudates were suggested as a factor in the selection of rhizosphere and endosphere microbiota.

MICROBIOLOGY SPECTRUM (2021)

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Article Agronomy

Plant growth-promoting root-colonizing bacterial endophytes

Bartholomew Saanu Adeleke et al.

Summary: Utilizing endophytic microbes to enhance crop productivity is a promising aspect of modern agricultural biotechnology, as they promote plant growth through direct or indirect mechanisms such as producing phytohormones. Their functions in sustaining plant growth under biotic and abiotic stresses make them valuable tools for eco-friendly agriculture, bioinoculants, biostimulants, and pollution control in phytoremediation.

RHIZOSPHERE (2021)

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Article Plant Sciences

Inoculation with Bacillus amyloliquefaciens and mycorrhiza confers tolerance to drought stress and improve seed yield and quality of soybean plant

Mohamed S. Sheteiwy et al.

Summary: The co-inoculation of Bacillus amyloliquefaciens and Arbuscular Mycorrhizal Fungi showed positive effects on the biomass, yield, and seed nutritive quality of soybean, mitigating the impact of drought stress. This co-inoculation also enhanced the expression of related genes and primary metabolites content.

PHYSIOLOGIA PLANTARUM (2021)

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Article Microbiology

Root Exudates Alter the Expression of Diverse Metabolic, Transport, Regulatory, and Stress Response Genes in Rhizosphere Pseudomonas

Olga V. Mavrodi et al.

Summary: Plants have mutualistic relationships with microorganisms that positively influence plant development, vigor, and adaptation to pathogens and abiotic stressors. Plant root exudates provide nutrients for soil microorganisms and modulate their affinity to host plants. The study reveals the impact of root exudates on carbon and energy supply for beneficial bacterial strains, as well as the regulatory effects on gene expression.

FRONTIERS IN MICROBIOLOGY (2021)

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Review Plant Sciences

Harnessing Bacterial Endophytes for Promotion of Plant Growth and Biotechnological Applications: An Overview

Ahmed M. Eid et al.

Summary: Endophytic bacteria form symbiotic relationships with plants, enhancing plant physiology, growth, and stress tolerance while also producing beneficial metabolites. They have a wide range of applications including bioremediation, disease control, and the production of nanoparticles.

PLANTS-BASEL (2021)

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Article Agronomy

Soil health considerations for global food security

Dianna K. Bagnall et al.

Summary: This paper examines the relationship between soil health and global food security, finding that soil health impacts crop yield, yield resilience, and farmer profitability. Despite mixed research results, the use of soil health management systems has been shown to increase crop yield, enhance yield resilience, and improve farmer income.

AGRONOMY JOURNAL (2021)

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Article Soil Science

Isolation and characterization of nodules endophytic bacteria Pseudomonas protegens Sneb1997 and Serratia plymuthica Sneb2001 for the biological control of root-knot nematode

Jinjie Zhao et al.

Summary: The study demonstrates that the endophytic bacteria Pseudomonas protegens Sneb1997 and Serratia plymuthica Sneb2001 have the potential as biological control agents against root-knot nematode disease, showing effective suppression of nematode population and promotion of plant growth.

APPLIED SOIL ECOLOGY (2021)

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Article Microbiology

Screening of sunflower associated bacteria as biocontrol agents for plant growth promotion

Sadia Bashir et al.

Summary: Three endophytic bacterial strains showed significant antifungal and plant growth promoting activities, with LV19 strain effectively suppressing Fusarium wilt in sunflower plants and enhancing plant growth parameters. The study suggests that LV19 strain has the potential to be developed as a biocontrol agent for plant growth promotion.

ARCHIVES OF MICROBIOLOGY (2021)

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Article Genetics & Heredity

Genomic assessment of Stenotrophomonas indicatrix for improved sunflower plant

Bartholomew Saanu Adeleke et al.

Summary: This study focused on the plant growth-promotion screening and genome analysis of S. indicatrix BOVIS40, revealing its potential in enhancing plant health and stress resistance. The genomic information highlighted various genes related to plant growth promotion and environmental stress resistance, offering insights into the application of S. indicatrix BOVIS40 as bioinoculants for sustainable agriculture.

CURRENT GENETICS (2021)

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Review Biochemistry & Molecular Biology

Diversity and Taxonomic Distribution of Endophytic Bacterial Community in the Rice Plant and Its Prospective

Mohsin Ali et al.

Summary: Endophytic bacterial communities are beneficial for host plants, promoting plant growth and protecting plants from pests and pathogens through indirect mechanisms. The colonization of these bacteria depends on the relationship between plants and environmental factors, and they have a wide host range.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

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Article Biochemistry & Molecular Biology

Dynamics of Bacterial Community Structure in the Rhizosphere and Root Nodule of Soybean: Impacts of Growth Stages and Varieties

Soo-In Sohn et al.

Summary: Bacterial communities in the rhizosphere and root nodules play a significant role in the growth and productivity of soybeans, with their structure influenced by the variety and growth stages of soybeans. Actinobacteria were found to be the most abundant in the rhizosphere, while Alphaproteobacteria dominated in the root nodules.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

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Article Environmental Sciences

Unlocking the potential plant growth-promoting properties of chickpea (Cicer arietinum L.) seed endophytes bio-inoculants for improving soil health and crop production

Arpan Mukherjee et al.

Summary: The study found that the treatment with endophytic microbes significantly increased soil organic carbon, electrical conductivity, organic matter, and nutrients like nitrogen, phosphorus, and potassium, as well as important soil enzymes and microbial populations. Additionally, the chickpea grain yield and plant biomass significantly increased in the microbial treatments in pot and field experiments, along with an increase in plant photosynthetic pigments.

LAND DEGRADATION & DEVELOPMENT (2021)

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Article Microbiology

Evaluation of seed associated endophytic bacteria from tolerant chilli cv. Firingi Jolokia for their biocontrol potential against bacterial wilt disease

Bhaskar Dowarah et al.

Summary: This study explored the seed endosphere of a bacterial wilt tolerant chilli cv. Firingi Jolokia to identify effective agents for biocontrol of bacterial wilt disease. Six endophytic bacteria were selected for their ability to inhibit R. solanacearum, with Bacillus subtilis (KJ-2) showing the highest biocontrol efficacy. Analysis identified known antimicrobial compounds in Bacillus subtilis (KJ-2) which contribute to the inhibition of R. solanacearum, highlighting the potential for seed endophytic isolates in controlling bacterial wilt.

MICROBIOLOGICAL RESEARCH (2021)

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Article Microbiology

Antifungal potential against Sclerotinia sclerotiorum (Lib.) de Bary and plant growth promoting abilities of Bacillus isolates from canola (Brassica napus L.) roots

Igor Daniel Alves Ribeiro et al.

Summary: Endophytic bacteria isolated from canola roots, particularly belonging to the Bacillus genus, showed potential in promoting plant growth and suppressing the phytopathogen Sclerotinia sclerotiorum. These bacteria produced various plant growth promotion traits and exhibited biocontrol activities through the production of antimicrobial compounds. The genomic features of these isolates demonstrated the presence of biosynthetic gene clusters related to antimicrobial metabolites, highlighting their potential as biofertilizers or biocontrol agents in agriculture.

MICROBIOLOGICAL RESEARCH (2021)

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Article Microbiology

Enhancing the Efficiency of Soybean Inoculant for Nodulation under Multi-Environmental Stress Conditions

Jenjira Wongdee et al.

Summary: The study focused on developing stress-tolerant Bradyrhizobium inoculants for soybeans under mixed stress conditions. Results showed that soybeans inoculated with stress-tolerant isolate 194 exhibited better growth performance and nodulation competition ability under various stress conditions, especially when supplemented with sucrose. This suggests that the inoculation of stress-tolerant Bradyrhizobium with sucrose supplementation could enhance bacterial survival and symbiosis efficiency under stress conditions.

POLISH JOURNAL OF MICROBIOLOGY (2021)

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Article Microbiology

Genomic Analysis of the Endophytic Stenotrophomonas Strain 169 Reveals Features Related to Plant-Growth Promotion and Stress Tolerance

Kristina Ulrich et al.

Summary: Plant-associated Stenotrophomonas isolates, such as Stenotrophomonas sp. 169, have the potential to promote plant growth by producing growth-stimulating hormones and enhancing plant tolerance to stress conditions. The genome of strain 169 contains functional genes associated with plant colonization, growth promotion, and stress protection.

FRONTIERS IN MICROBIOLOGY (2021)

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Review Plant Sciences

Plant Disease Management: Leveraging on the Plant-Microbe-Soil Interface in the Biorational Use of Organic Amendments

Akinlolu Olalekan Akanmu et al.

Summary: This review highlights the role of organic amendments in restoring soil health and managing plant diseases, emphasizing the importance of stimulating beneficial microbial communities formation and resistance against diseases. Further research is needed to elaborate the mechanisms of action of organic amendments to ensure food safety.

FRONTIERS IN PLANT SCIENCE (2021)

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Article Green & Sustainable Science & Technology

Effects of Rhizophagus intraradices on Plant Growth and the Composition of Microbial Communities in the Roots of Continuous Cropping Soybean at Maturity

Wei-Guang Jie et al.

Summary: The study found that inoculation of Rhizophagus intraradices resulted in the highest mycorrhizal colonization rate in soybean plants after 1 year of continuous cropping, significantly increasing plant growth. Inoculation of R. intraradices under 0 years of continuous cropping resulted in the highest biomass parameters. Additionally, bacterial diversity decreased with soybean continuous cropping, while fungal diversity increased.

SUSTAINABILITY (2021)

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Article Agronomy

Effects of Nitrogen Application Rate on Rhizosphere Microbial Diversity in Oilseed Rape (Brassica napus L.)

Man Xing et al.

Summary: Nitrogen is essential for the growth of oilseed rape, and the diversity and community structure of rhizosphere microbial communities are significantly affected by nitrogen fertilization. The diversity and richness of bacterial communities in the rhizosphere of oilseed rape were lower under low nitrogen application, while higher nitrogen levels maintained a higher community diversity of bacteria and fungi. Overall, conventional nitrogen application resulted in higher diversity of rhizosphere bacterial communities compared to other nitrogen application rates.

AGRONOMY-BASEL (2021)

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Review Agronomy

Plant Growth-Promoting Bacteria as Bioinoculants: Attributes and Challenges for Sustainable Crop Improvement

Ma. del Carmen Orozco-Mosqueda et al.

Summary: Plant growth-promoting bacteria (PGPB) are beneficial for plant growth and can replace toxic agrochemicals, but their application in developing countries is limited. This study explores the mechanisms, application technologies, and solutions related to PGPBs, emphasizing their importance in sustainable agriculture.

AGRONOMY-BASEL (2021)

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Article Agronomy

Identification of Canola Roots Endophytic Bacteria and Analysis of Their Potential as Biofertilizers for Canola Crops with Special Emphasis on Sporulating Bacteria

Pilar Martinez-Hidalgo et al.

Summary: Canola is the third most common oil-producing crop worldwide, cultivation requires chemical fertilizers but the use can be reduced with plant growth-promoting bacteria; identified endophytic bacteria isolates from canola roots, including Bacillus, Neobacillus, Paenibacillus, Pseudomonas, and Peribacillus genera, some of which efficiently promote canola seedling growth; Paenibacillus and Peribacillus isolates were the most promising biofertilizers for canola crops, particularly due to their sporulated rods trait.

AGRONOMY-BASEL (2021)

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Article Microbiology

A Plant Endophytic Bacterium, Burkholderia seminalis Strain 869T2, Promotes Plant Growth in Arabidopsis, Pak Choi, Chinese Amaranth, Lettuces, and Other Vegetables

Hau-Hsuan Hwang et al.

Summary: The plant endophytic bacterium Burkholderia seminalis 869T2 promotes plant growth and production in various plant species through multiple mechanisms.

MICROORGANISMS (2021)

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Article Plant Sciences

Genomic Analysis of Endophytic Bacillus cereus T4S and Its Plant Growth-Promoting Traits

Bartholomew Saanu Adeleke et al.

Summary: This study presents the whole-genome sequence of agriculturally important B. cereus strain T4S isolated from sunflower plants, and identifies some crucial genes in the genome that promote plant growth, suggesting the potential relevance of strain T4S in agricultural biotechnology.

PLANTS-BASEL (2021)

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Article Microbiology

Insights into the Bioprospecting of the Endophytic Fungi of the Medicinal Plant Palicourea rigida Kunth (Rubiaceae): Detailed Biological Activities

Igor Romeiro dos Santos et al.

Summary: The study found that endophytic fungi from the Brazilian savanna have potential medicinal and bioremediation properties, and can act as biological control agents against phytopathogenic fungi in agricultural applications.

JOURNAL OF FUNGI (2021)

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Article Plant Sciences

Bacterial Microbiomes Associated with the Rhizosphere, Root Interior, and Aboveground Plant Organs of Wheat and Canola at Different Growth Stages

Jorge Cordero Elvia et al.

Summary: This study revealed the diversity of bacterial communities associated with wheat and canola plants at different growth stages and organs, as well as the influence of soil characteristics on rhizosphere bacterial communities. The results also identified predominant bacterial genera in the rhizosphere and roots of the crops, showcasing the specific relationships between plant species, soil, and bacterial communities.

PHYTOBIOMES JOURNAL (2021)

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Article Biochemistry & Molecular Biology

Bacterial community structure of the sunflower (Helianthus annuus) endosphere

Bartholomew Saanu Adeleke et al.

Summary: This study investigated the endophytic bacterial community structure of sunflower plants at the growing stage, revealing dominant bacterial species in the root and stem. The diversity of bacterial communities in plant organs across different sites was significantly different, with observed influences of soil physical and chemical parameters on bacterial distribution. The study provides insight into the potential use of these bacteria as bioinoculants for enhancing agricultural yields in the future.

PLANT SIGNALING & BEHAVIOR (2021)

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Review Plant Sciences

Plant microbiome structure and benefits for sustainable agriculture

Lidiane Figueiredo Santos et al.

Summary: Plants are colonized by diverse micro-organisms known as microbiome, which play essential roles in their habitats. Research on microbiomes shows promise in sustainable agriculture, although there is still much to learn about their composition and influencing factors.

CURRENT PLANT BIOLOGY (2021)

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Review Plant Sciences

Plant-microbiome interactions for sustainable agriculture: a review

Rupali Gupta et al.

Summary: Plant-microbiome interactions play a significant role in nutrient acquisition and defense mechanisms of the host plant. Understanding and utilizing plant microbiomes can have implications for future agricultural applications.

PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2021)

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Article Agriculture, Multidisciplinary

The significance of soybean production in the face of changing climates in Africa

Brivery Siamabele

Summary: This paper reviews the significance of soybeans production in Africa in the face of changing climates, highlighting how soybeans can help alleviate poverty and enhance food security in the region. Despite challenges such as lack of credit funds and seed recycling hindering adoption levels, soybeans farming remains important for small-scale agricultural systems in Africa.

COGENT FOOD & AGRICULTURE (2021)

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Article Entomology

Endophytic fungi associated with soybean plants and their antagonistic activity against Rhizoctonia solani

Nashwa Sallam et al.

Summary: The study found that certain endophytic fungi associated with soybean plants have the potential to manage root rot diseases in soybean. Additionally, these isolates may be considered to have a growth-promoting effect on soybean plants.

EGYPTIAN JOURNAL OF BIOLOGICAL PEST CONTROL (2021)

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Review Biochemistry & Molecular Biology

Bioactive Secondary Metabolites from Endophytic Fungi

Elena Ancheeva et al.

CURRENT MEDICINAL CHEMISTRY (2020)

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Review Food Science & Technology

Milk Analog: Plant based alternatives to conventional milk, production, potential and health concerns

Anna Aleena Paul et al.

CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2020)

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Article Plant Sciences

Synergistic effect of endophytic selenobacteria on biofortification and growth of Glycine max under drought stress

G. Trivedi et al.

SOUTH AFRICAN JOURNAL OF BOTANY (2020)

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Article Ecology

Epiphytic and Endophytic Bacteria on Olive Tree Phyllosphere: Exploring Tissue and Cultivar Effect

Diogo Mina et al.

MICROBIAL ECOLOGY (2020)

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Article Microbiology

Illumina sequencing of 16S rRNA tag shows disparity in rhizobial and non-rhizobial diversity associated with root nodules of mung bean (Vigrta radiata L.) growing in different habitats in Pakistan

Sughra Hakim et al.

MICROBIOLOGICAL RESEARCH (2020)

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Article Biotechnology & Applied Microbiology

Selection of fungal endophytes with biocontrol potential against Fusarium head blight in wheat

Edward C. Rojas et al.

BIOLOGICAL CONTROL (2020)

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Article Plant Sciences

Beneficial Endophytic Bacterial Populations Associated With Medicinal Plant Thymus vulgaris Alleviate Salt Stress and Confer Resistance to Fusarium oxysporum

Osama Abdalla Abdelshafy Mohamad et al.

FRONTIERS IN PLANT SCIENCE (2020)

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Article Biotechnology & Applied Microbiology

Bioinformatics analysis of endophytic bacteria related to berberine in the Chinese medicinal plant Coptis teeta Wall

Tian-hao Liu et al.

3 BIOTECH (2020)

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Article Biotechnology & Applied Microbiology

Investigating the endophytic bacterial diversity and community structures in seeds of genetically related maize (Zea mays L.) genotypes

Yang Liu et al.

3 BIOTECH (2020)

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Article Biotechnology & Applied Microbiology

Multi-trait PGP rhizobacterial endophytes alleviate drought stress in a senescent genotype of sorghum [Sorghum bicolor (L.) Moench]

Venkadasamy Govindasamy et al.

3 BIOTECH (2020)

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Article Plant Sciences

Plant growth-promoting endophytic bacteria augment growth and salinity tolerance in rice plants

M. A. Khan et al.

PLANT BIOLOGY (2020)

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Article Plant Sciences

Bacillus subtilis can modulate the growth and root architecture in soybean through volatile organic compounds

Lorrayne Guimaraes Bavaresco et al.

THEORETICAL AND EXPERIMENTAL PLANT PHYSIOLOGY (2020)

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Review Biotechnology & Applied Microbiology

Elucidating Mechanisms of Endophytes Used in Plant Protection and Other Bioactivities With Multifunctional Prospects

Ayomide Emmanuel Fadiji et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2020)

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Article Microbiology

Sorghum Growth Promotion by Paraburkholderia tropica and Herbaspirillum frisingense: Putative Mechanisms Revealed by Genomics and Metagenomics

Eiko E. Kuramae et al.

MICROORGANISMS (2020)

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Article Plant Sciences

Bacterial CompoundN,N-Dimethylhexadecylamine Modulates Expression of Iron Deficiency and Defense Response Genes inMedicago truncatulaIndependently of the Jasmonic Acid Pathway

Vicente Montejano-Ramirez et al.

PLANTS-BASEL (2020)

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Article Microbiology

Analysis of the Endophytic Bacteria Community Structure and Function of Panax notoginseng Based on High-Throughput Sequencing

Chen Zhang et al.

CURRENT MICROBIOLOGY (2020)

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Article Biotechnology & Applied Microbiology

Identification, cloning and expression patterns of the genes related to phosphate solubilization in Burkholderia multivorans WS-FJ9 under different soluble phosphate levels

Yu-Qing Liu et al.

AMB EXPRESS (2020)

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Article Microbiology

Metagenomic profiling of the community structure, diversity, and nutrient pathways of bacterial endophytes in maize plant

Ayomide Emmanuel Fadiji et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2020)

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Review Plant Sciences

Secondary metabolites as plant defensive strategy: a large role for small molecules in the near root region

Atilade Adedayo Adedeji et al.

PLANTA (2020)

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Review Plant Sciences

Edible Plant Oil: Global Status, Health Issues, and Perspectives

Ying Zhou et al.

FRONTIERS IN PLANT SCIENCE (2020)

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Article Agronomy

Comparison of Two Inoculation Methods of Endophytic Bacteria to Enhance Phytodegradation Efficacy of an Aged Petroleum Hydrocarbons Polluted Soil

Malgorzata Pawlik et al.

AGRONOMY-BASEL (2020)

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Article Agronomy

Motility and biofilm production involved in the interaction of phosphate solubilizing endophytic strains with peanut, maize and soybean plants

Cinthia Tamara Lucero et al.

RHIZOSPHERE (2020)

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Article Biochemistry & Molecular Biology

Genome Mining and Evaluation of the Biocontrol Potential of Pseudomonas fluorescens BRZ63, a New Endophyte of Oilseed Rape (Brassica napus L.) against Fungal Pathogens

Daria Chlebek et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

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Article Agronomy

Selection of the Root Endophyte Pseudomonas brassicacearum CDVBN10 as Plant Growth Promoter for Brassica napus L. Crops

Alejandro Jimenez-Gomez et al.

AGRONOMY-BASEL (2020)

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Article Microbiology

Deciphering operation of tryptophan-independent pathway in high indole-3-acetic acid (IAA) producing Micrococcus aloeverae DCB-20

Ees Ahmad et al.

FEMS MICROBIOLOGY LETTERS (2020)

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Article Biotechnology & Applied Microbiology

Fungichromin production by Streptomyces sp. WP-1, an endophyte from Pinus dabeshanensis, and its antifungal activity against Fusarium oxysporum

Cheng Peng et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2020)

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Article Entomology

Culture-dependent analysis of seed bacterial endophyte,Pseudomonasspp. EGN 1 against the stem rot disease (Sclerotium rolfsiiSacc.) in groundnut

T. Archana et al.

EGYPTIAN JOURNAL OF BIOLOGICAL PEST CONTROL (2020)

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Article Agricultural Engineering

Safflower (Carthamus tinctorius L.) seed vigor tests for the prediction of field emergence

A. Soleymani

INDUSTRIAL CROPS AND PRODUCTS (2019)

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Article Biotechnology & Applied Microbiology

Synergism of Pseudomonas aeruginosa (LSE-2) nodule endophyte with Bradyrhizobium sp. (LSBR-3) for improving plant growth, nutrient acquisition and soil health in soybean

K. C. Kumawat et al.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2019)

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Article Biotechnology & Applied Microbiology

Assessment of Plant Growth Promoting and Abiotic Stress Tolerance Properties of Wheat Endophytic Fungi

Farhana Alam Ripa et al.

BIOMED RESEARCH INTERNATIONAL (2019)

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Review Multidisciplinary Sciences

The soybean rhizosphere: Metabolites, microbes, and beyond-A review

Akifumi Sugiyama

JOURNAL OF ADVANCED RESEARCH (2019)

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Article Microbiology

Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants

Imran Afzal et al.

MICROBIOLOGICAL RESEARCH (2019)

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Article Genetics & Heredity

Colonization of legumes by an endophytic Fusarium solani strain FsK reveals common features to symbionts or pathogens

Vasiliki Skiada et al.

FUNGAL GENETICS AND BIOLOGY (2019)

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Article Agronomy

Effect of irrigation on charcoal rot severity, yield loss and colonization of soybean and sunflower

Estiene Jordaan et al.

CROP PROTECTION (2019)

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Review Environmental Sciences

Promising bacterial genera for agricultural practices: An insight on plant growth-promoting properties and microbial safety aspects

Carlos M. H. Ferreira et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

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Article Environmental Sciences

Inoculation of plant growth promoting bacteria from hyperaccumulator facilitated non-host root development and provided promising agents for elevated phytoremediation efficiency

Qiong Wang et al.

CHEMOSPHERE (2019)

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Article Microbiology

Characterization and Metabolism Effect of Seed Endophytic Bacteria Associated With Peanut Grown in South China

Limei Li et al.

FRONTIERS IN MICROBIOLOGY (2019)

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Review Agronomy

Agricultural and Other Biotechnological Applications Resulting from Trophic Plant-Endophyte Interactions

Agnieszka Kuzniar et al.

AGRONOMY-BASEL (2019)

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Review Microbiology

Bacterial and Fungal Endophytes: Tiny Giants with Immense Beneficial Potential for Plant Growth and Sustainable Agricultural Productivity

Olawale Israel Omomowo et al.

MICROORGANISMS (2019)

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Article Soil Science

Common and unique rhizosphere microbial communities of wheat and canola in a semiarid Mediterranean environment

Daniel C. Schlatter et al.

APPLIED SOIL ECOLOGY (2019)

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Article Biotechnology & Applied Microbiology

Efficacy of plant growth promoting bacteria Bacillus amyloliquefaciens B9601-Y2 for biocontrol of southern corn leaf blight

Wenyan Cui et al.

BIOLOGICAL CONTROL (2019)

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Article Immunology

Molecular identification and structural characterization of marine endophytic actinomycetes Nocardiopsis sp. GRG 2 (KT 235641) and its antibacterial efficacy against isolated ESBL producing bacteria

Govindan Rajivgandhi et al.

MICROBIAL PATHOGENESIS (2019)

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Article Microbiology

Antimicrobial, plant growth-promoting and genomic properties of the peanut endophyte Bacillus velezensis LDO2

Liang Chen et al.

MICROBIOLOGICAL RESEARCH (2019)

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Article Microbiology

Isolation and characterization of endophytes from nodules of Mimosa pudica with biotechnological potential

Ricardo Sanchez-Cruz et al.

MICROBIOLOGICAL RESEARCH (2019)

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Article Plant Sciences

Diversity and Functionality of Culturable Endophytic Bacterial Communities in Chickpea Plants

Clarisse Brigido et al.

PLANTS-BASEL (2019)

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Article Plant Sciences

Isolation and Characterization of Plant Growth-Promoting Endophytic Fungi from the Roots of Dendrobium moniliforme

Sujit Shah et al.

PLANTS-BASEL (2019)

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Article Biotechnology & Applied Microbiology

Screening of stress tolerant bacterial strains possessing interesting multi-plant growth promoting traits isolated from root nodules of Phaseolus vulgaris L.

Imane El Attar et al.

BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY (2019)

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Article Agronomy

Community structure and diversity of endophytic bacteria in seeds of three consecutive generations of Crotalaria pumila growing on metal mine residues

Ariadna S. Sanchez-Lopez et al.

PLANT AND SOIL (2018)

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Article Microbiology

Antagonistic endophytic bacteria associated with nodules of soybean (Glycine max L.) and plant growth-promoting properties

LongFei Zhao et al.

BRAZILIAN JOURNAL OF MICROBIOLOGY (2018)

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Article Chemistry, Medicinal

An endophytic Fungi of Ginkgo biloba L. produces antimicrobial metabolites as potential inhibitors of FtsZ of Staphylococcus aureus

Ying-Ying Wu et al.

FITOTERAPIA (2018)

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Article Biotechnology & Applied Microbiology

Consistent associations with beneficial bacteria in the seed endosphere of barley (Hordeum vulgare L.)

Md Mahafizur Rahman et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2018)

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Article Agronomy

Diversity and Antifungal Activity of Endophytic Fungi Associated with Camellia oleifera

Jinxiu Yu et al.

MYCOBIOLOGY (2018)

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Article Soil Science

Growth promotion of rapeseed (Brassica napus) associated with the inoculation of phosphate solubilizing bacteria

Lucio Valetti et al.

APPLIED SOIL ECOLOGY (2018)

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Review Agronomy

Abiotic and biotic factors affecting crop seed germination and seedling emergence: a conceptual framework

Jay Ram Lamichhane et al.

PLANT AND SOIL (2018)

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Review Plant Sciences

Endophytic fungi as biocontrol agents: elucidating mechanisms in disease suppression

Meike A. C. Latz et al.

PLANT ECOLOGY & DIVERSITY (2018)

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Article Multidisciplinary Sciences

Root colonization and growth promotion of soybean, wheat and Chinese cabbage by Bacillus cereus YL6

Yongli Ku et al.

PLOS ONE (2018)

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Review Agronomy

History, current status, and prospects of soybean production and research in sub-Saharan Africa

Dalia Mohamedkheir Khojely et al.

CROP JOURNAL (2018)

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Article Biotechnology & Applied Microbiology

Diversity of endophytic bacteria of Dendrobium officinale based on culture-dependent and culture-independent methods

Cong Pei et al.

BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT (2017)

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Review Environmental Sciences

Biofertilizers: a potential approach for sustainable agriculture development

Trishna Mahanty et al.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2017)

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Article Plant Sciences

Effects of two new siderophore-producing rhizobacteria on growth and iron content of maize and canola plants

Nazanin Ghavami et al.

JOURNAL OF PLANT NUTRITION (2017)

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Article Plant Sciences

Inoculation of abscisic acid-producing endophytic bacteria enhances salinity stress tolerance in Oryza sativa

Raheem Shahzad et al.

ENVIRONMENTAL AND EXPERIMENTAL BOTANY (2017)

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Article Biochemistry & Molecular Biology

Endophytes from medicinal plants and their potential for producing indole acetic acid, improving seed germination and mitigating oxidative stress

Abdul Latif Khan et al.

JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B (2017)

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Review Environmental Sciences

Efficient phytoremediation of organic contaminants in soils using plant-endophyte partnerships

Nai-Xian Feng et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2017)

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Article Microbiology

Endophytic Bacteria Improve Plant Growth, Symbiotic Performance of Chickpea (Cicer arietinum L.) and Induce Suppression of Root Rot Caused by Fusarium solani under Salt Stress

Dilfuza Egamberdieva et al.

FRONTIERS IN MICROBIOLOGY (2017)

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Article Microbiology

A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds

Birgit Mitter et al.

Frontiers in Microbiology (2017)

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Article Microbiology

Deciphering composition and function of the root microbiome of a legume plant

Kyle Hartman et al.

MICROBIOME (2017)

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Article Plant Sciences

Plant growth promoting effect of Bacillus amyloliquefaciens H-2-5 on crop plants and influence on physiological changes in soybean under soil salinity

Min-Ji Kim et al.

PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2017)

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Article Multidisciplinary Sciences

The Variation in the Rhizosphere Microbiome of Cotton with Soil Type, Genotype and Developmental Stage

Qinghua Qiao et al.

SCIENTIFIC REPORTS (2017)

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Article Microbiology

Illumina-based analysis of endophytic bacterial diversity of tree peony (Paeonia Sect. Moutan) roots and leaves

Ruixian Yang et al.

BRAZILIAN JOURNAL OF MICROBIOLOGY (2017)

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Article Biotechnology & Applied Microbiology

Application of endophytic bacteria for the biocontrol of Rhizoctonia solani (Cantharellales: ceratobasidiaceae) damping-off disease in cotton seedlings

Hend M. M. Selim et al.

BIOCONTROL SCIENCE AND TECHNOLOGY (2017)

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Article Soil Science

Evidence of nitrogen fixation and growth promotion in canola (Brassica napus L.) by an endophytic diazotroph Paenibacillus polymyxa P2b-2R

Akshit Puri et al.

BIOLOGY AND FERTILITY OF SOILS (2016)

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Article Agronomy

Synergistic interactions between Bradyrhizobium japonicum and the endophyte Stenotrophomonas rhizophila and their effects on growth, and nodulation of soybean under salt stress

Dilfuza Egamberdieva et al.

PLANT AND SOIL (2016)

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Article Biotechnology & Applied Microbiology

Endophytic occupation of legume root nodules by nifH-positive non-rhizobial bacteria, and their efficacy in the groundnut (Arachis hypogaea)

Archana Dhole et al.

ANNALS OF MICROBIOLOGY (2016)

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Review Plant Sciences

Plant Diseases and Management Approaches in Organic Farming Systems

A. H. C. van Bruggen et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 54 (2016)

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Article Biochemistry & Molecular Biology

Endophytic Actinobacteria from the Brazilian Medicinal Plant Lychnophora ericoides Mart. and the Biological Potential of Their Secondary Metabolites

Raphael Conti et al.

CHEMISTRY & BIODIVERSITY (2016)

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Article Biotechnology & Applied Microbiology

Culturable endophytic bacterial communities associated with field-grown soybean

K. B. de Almeida Lopes et al.

JOURNAL OF APPLIED MICROBIOLOGY (2016)

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Review Biotechnology & Applied Microbiology

Bioprospecting plant-associated microbiomes

Christina A. Muller et al.

JOURNAL OF BIOTECHNOLOGY (2016)

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Review Microbiology

Plant growth-promoting bacterial endophytes

Gustavo Santoyo et al.

MICROBIOLOGICAL RESEARCH (2016)

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Review Agronomy

Rhizodeposition under drought and consequences for soil communities and ecosystem resilience

Catherine Preece et al.

PLANT AND SOIL (2016)

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Article Biochemistry & Molecular Biology

Plant root-microbe communication in shaping root microbiomes

Andrew Lareen et al.

PLANT MOLECULAR BIOLOGY (2016)

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Article Agriculture, Multidisciplinary

Biological Control of Rice Bakanae by an Endophytic Bacillus oryzicola YC7007

Mohammad Tofajjal Hossain et al.

PLANT PATHOLOGY JOURNAL (2016)

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Article Soil Science

Structural and functional differentiation of the root-associated bacterial microbiomes of perennial ryegrass

Lin Chen et al.

SOIL BIOLOGY & BIOCHEMISTRY (2016)

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Review Plant Sciences

Omics Tools for Better Understanding the Plant-Endophyte Interactions

Sanjana Kaul et al.

FRONTIERS IN PLANT SCIENCE (2016)

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Article Biochemical Research Methods

Impact of metagenomic DNA extraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench)

Mapula Kgomotso Annah Maropola et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2015)

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Article Multidisciplinary Sciences

Metagenomic insights into communities, functions of endophytes, and their associates with infection by root-knot nematode, Meloidogyne incognita, in tomato roots

Bao-Yu Tian et al.

SCIENTIFIC REPORTS (2015)

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Article Mycology

Endophytic bacteria from wheat grain as biocontrol agents of Fusarium graminearum and deoxynivalenol production in wheat

D. Pan et al.

MYCOTOXIN RESEARCH (2015)

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Article Biotechnology & Applied Microbiology

Characterization of mineral phosphate-solubilizing bacteria for enhanced sunflower growth and yield-attributing traits

Muhammad Shahid et al.

ANNALS OF MICROBIOLOGY (2015)

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Article Plant Sciences

Endophytic bacteria improve nodule function and plant nitrogen in soybean on co-inoculation with Bradyrhizobium japonicum MN110

Parthiban Subramanian et al.

PLANT GROWTH REGULATION (2015)

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Article

Effect of ultraviolet-B (UV-B) radiation on bacterial community in the soybean phyllosphere

L. Sber M. et al.

African Journal of Microbiology Research (2014)

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Article Biotechnology & Applied Microbiology

Diversity and biocontrol potential of endophytic fungi in Brassica napus

Qinghua Zhang et al.

BIOLOGICAL CONTROL (2014)

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Article Agronomy

Combined Effect of Phosphate-Solubilizing Microorganisms, Rhizobium and Enterobacter on Root Nodulation and Physiology of Soybean (Glycine max L.)

Samina Yasmeen et al.

COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS (2014)

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Article Plant Sciences

Increased drought stress resilience of maize through endophytic colonization by Burkholderia phytofirmans PsJN and Enterobacter sp FD17

Muhammad Naveed et al.

ENVIRONMENTAL AND EXPERIMENTAL BOTANY (2014)

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Review Microbiology

Plant growth promotion in cereal and leguminous agricultural important plants: From microorganism capacities to crop production

F. Perez-Montano et al.

MICROBIOLOGICAL RESEARCH (2014)

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Article Biotechnology & Applied Microbiology

Molecular characterization and identification of plant growth promoting endophytic bacteria isolated from the root nodules of pea (Pisum sativum L.)

Mohsin Tariq et al.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2014)

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Editorial Material Immunology

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Elaine Allan

VIRULENCE (2014)

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Article Genetics & Heredity

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

Natacha Bodenhausen et al.

PLOS GENETICS (2014)

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Review Biotechnology & Applied Microbiology

Diversity, mechanism and biotechnology of phosphate solubilising microorganism in mangrove-A review

B. C. Behera et al.

BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY (2014)

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Article Agronomy

Combining antagonistic endophytic bacteria in different growth stages of cotton for control of Verticillium wilt

Pei Yang et al.

CROP PROTECTION (2013)

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Article Biochemical Research Methods

Practical innovations for high-throughput amplicon sequencing

Derek S. Lundberg et al.

NATURE METHODS (2013)

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Article Multidisciplinary Sciences

Endophytic Fungi Isolated from Oil-Seed Crop Jatropha curcas Produces Oil and Exhibit Antifungal Activity

Susheel Kumar et al.

PLOS ONE (2013)

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Article Biochemistry & Molecular Biology

Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis

A. Sessitsch et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2012)

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Article Microbiology

Endophytic bacterial community of a Mediterranean marine angiosperm (Posidonia oceanica)

Neus Garcias-Bonet et al.

FRONTIERS IN MICROBIOLOGY (2012)

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Article Biotechnology & Applied Microbiology

Presence of endophytic bacteria in Vitis vinifera leaves as detected by fluorescence in situ hybridization

Sandra Lo Piccolo et al.

ANNALS OF MICROBIOLOGY (2010)

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Article Biotechnology & Applied Microbiology

Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated with Different Potato Cultivars in Two Fields

Ozgul Inceoglu et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

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Article Biotechnology & Applied Microbiology

Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5

Marcelo Bertalan et al.

BMC GENOMICS (2009)

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Review Biochemistry & Molecular Biology

Cultivating the uncultured: limits, advances and future challenges

Karine Alain et al.

EXTREMOPHILES (2009)

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Article Ecology

Development of a Bacterial Cell Enrichment Method and its Application to the Community Analysis in Soybean Stems

Seishi Ikeda et al.

MICROBIAL ECOLOGY (2009)

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Article Biotechnology & Applied Microbiology

Identification of culturable and originally non-culturable endophytic bacteria isolated from shoot tip cultures of banana cv. Grand Naine

Pious Thomas et al.

PLANT CELL TISSUE AND ORGAN CULTURE (2008)

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Review Plant Sciences

Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification

Masahito Hayatsu et al.

SOIL SCIENCE AND PLANT NUTRITION (2008)

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Article Biochemistry & Molecular Biology

1-aminocyclopropane-1-carboxylate deaminase from Pseudomonas putida UW4 facilitates the growth of canola in the presence of salt

Zhenyu Cheng et al.

CANADIAN JOURNAL OF MICROBIOLOGY (2007)

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Article Biotechnology & Applied Microbiology

Isolation and characterization of a co-producer of fengycins and surfactins, endophytic Bacillus amyloliquefaciens ES-2, from Scutellaria baicalensis Georgi

Lijun Sun et al.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2006)

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Review Microbiology

Microbial diversity and function in soil:: from genes to ecosystems

V Torsvik et al.

CURRENT OPINION IN MICROBIOLOGY (2002)

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