Unified fast reconstruction algorithm for conventional, phase-contrast, and diffraction tomography

A unified method for three-dimensional reconstruction of objects from transmission images collected at multi-ple illumination directions is described. The method may be applicable to experimental conditions relevant to absorption-based, phase-contrast, or diffraction imaging using x rays, electrons, and other forms of penetrating radiation or matter waves. Both the phase retrieval (also known as contrast transfer function correction) and the effect of Ewald sphere curvature (in the cases with a shallow depth of field and significant in-object diffraction) are incorporated in the proposed algorithm and can be taken into account. Multiple scattering is not treated explicitly but can be mitigated as a result of angular averaging that constitutes an essential feature of the method. The corresponding numerical algorithm is based on three-dimensional gridding which allows for fast computa-tional implementation, including a straightforward parallelization. The algorithm can be used with any scanning geometry involving plane-wave illumination. A software code implementing the proposed algorithm has been developed, tested on simulated and experimental image data, and made publicly available.

Automated summary

This paper presents a unified method for three-dimensional reconstruction of objects from transmission images collected at multiple illumination directions. The method is applicable to various experimental conditions and incorporates phase retrieval and Ewald sphere curvature effects, while mitigating multiple scattering. The algorithm is based on three-dimensional gridding, allowing for fast and parallel implementation.