4.3 Article

Phylogeny and systematics of the tribe Sonerileae (Melastomataceae) in Africa: A revised taxonomic classification

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Out of chaos: Phylogenomics of Asian Sonerileae

Qiu-Jie Zhou et al.

Summary: This study reconstructed the phylogeny of Asian Sonerileae using genome resequencing data and provided the first well resolved phylogeny of this diverse plant lineage. The study revealed widespread phylogenetic discordance in Asian Sonerileae, mainly caused by biased distribution of missing data, random noise from uninformative genes, incomplete lineage sorting, and hybridization/introgression. This research is important for future taxonomic revision of Asian Sonerileae at the generic level.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2022)

Article Plant Sciences

A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set

Olivier Maurin et al.

Summary: This study utilized the Angiosperms353 probe kit to evaluate 485 species in the Myrtales order, providing the most comprehensive phylogenetic hypothesis to date. The results highlight the power of high-throughput sequencing and the probe kit for phylogenomic analysis, but also underscore the presence of gene conflict and uncertain relationships within the order.

AMERICAN JOURNAL OF BOTANY (2021)

Article Plant Sciences

Molecular phylogenetics of the Dissochaeta alliance (Melastomataceae): Redefining tribe Dissochaeteae

Abdulrokhman Kartonegoro et al.

Summary: The Dissochaeta alliance, a group of woody climbing plants within Melastomataceae, mainly distributed in Southeast Asia, has been redefined through molecular analysis, leading to a new classification system for the alliance and its genera.
Article Biochemistry & Molecular Biology

MEGA11 Molecular Evolutionary Genetics Analysis Version 11

Koichiro Tamura et al.

Summary: MEGA software, a mature tool for computational molecular evolution, has been enhanced with new additions for building timetrees of species, pathogens, and gene families using rapid relaxed-clock methods. These additions include methods for estimating divergence times, confidence intervals, and new options for tagging sequences with spatiotemporal sampling information. The enhancements aim to improve user experience, result quality, and the pace of biological discovery.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

Article Plant Sciences

Revisiting the classification of Melastomataceae: implications for habit and fruit evolution

Lucas F Bacci et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2019)

Article Biochemical Research Methods

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Remco Bouckaert et al.

PLOS COMPUTATIONAL BIOLOGY (2019)

Article Plant Sciences

Phylogenetics, morphology and circumscription of Cambessedesieae: a new Neotropical tribe of Melastomataceae

Thuane Bochorny et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2019)

Article Plant Sciences

Phylogeny and systematics of African Melastomateae (Melastomataceae)

Marie Claire Veranso-Libalah et al.

Review Plant Sciences

Phylogenetic relationships in the Marcetia alliance (Melastomeae, Melastomataceae) and implications for generic circumscription

Maria Jose R. Rocha et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2016)

Article Biochemistry & Molecular Biology

Untangling the phylogeny of Leandra s.str. (Melastomataceae, Miconieae)

Marcelo Reginato et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Discovery of unusual anatomical and continuous characters in the evolutionary history of Conostegia (Miconieae: Melastomataceae)

Ricardo Kriebel et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Plant Sciences

Phylogenetic relationships and distribution of New World Melastomeae (Melastomataceae)

Fabian A. Michelangeli et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2013)

Article Plant Sciences

COMBINED MOLECULAR AND MORPHOLOGICAL PHYLOGENETIC ANALYSES OF THE BLAKEEAE (MELASTOMATACEAE)

Darin S. Penneys et al.

INTERNATIONAL JOURNAL OF PLANT SCIENCES (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

Robert Lanfear et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Plant Sciences

Henrietteeae (Melastomataceae): A New Neotropical Berry-Fruited Tribe

D. S. Penneys et al.

SYSTEMATIC BOTANY (2010)