4.7 Article

Microbiome analysis revealing microbial interactions and secondary bacterial infections in COVID-19 patients comorbidly affected by Type 2 diabetes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Public, Environmental & Occupational Health

Genomic analysis of SARS-CoV-2 variants of concern identified from the ChAdOx1 nCoV-19 immunized patients from Southwest part of Bangladesh

Hassan M. Al-Emran et al.

Summary: This study found that in Bangladesh, although ChAdOx1 vaccine has been administered, a single dose cannot fully prevent new infection or severe COVID-19 outcomes, which are mainly caused by the B.1.351 variant.

JOURNAL OF INFECTION AND PUBLIC HEALTH (2022)

Article Pharmacology & Pharmacy

The active lung microbiota landscape of COVID-19 patients through the metatranscriptome data analysis

Yang Han et al.

Summary: SARS-CoV-2 infection profoundly altered the lung microbiota of COVID-19 patients, with the presence of various pathogens, immunomodulatory probiotics, and Tobacco mosaic virus in the COVID-19 group indicating a complex and active lung microbiota disorder.

BIOIMPACTS (2022)

Article Virology

In silico analyses on the comparative sensing of SARS-CoV-2 mRNA by the intracellular TLRs of humans

Abhigyan Choudhury et al.

Summary: This study demonstrates the potential role of TLR3, 7, and 9 in COVID-19 immunobiology, with the viral mRNAs of NSP10, S2, and E proteins of SARS-CoV-2 binding to TLR3, TLR9, and TLR7 respectively, triggering downstream inflammatory signaling cascades. The binding of viral mRNAs leads to conformational changes in the ligand-binding domain of TLRs, validating the activation of inflammatory responses.

JOURNAL OF MEDICAL VIROLOGY (2021)

Article Cell Biology

Integrated characterization of SARS-CoV-2 genome, microbiome, antibiotic resistance and host response from single throat swabs

Bo Lu et al.

Summary: The study utilized the TRACE-seq method to analyze clinical samples from COVID-19 patients, allowing rapid and sensitive identification of SARS-CoV-2 genome information and host response, ultimately improving diagnostic accuracy for infectious diseases.

CELL DISCOVERY (2021)

Review Public, Environmental & Occupational Health

Predictive symptoms and comorbidities for severe COVID-19 and intensive care unit admission: a systematic review and meta-analysis

Vageesh Jain et al.

INTERNATIONAL JOURNAL OF PUBLIC HEALTH (2020)

Article Biochemical Research Methods

Nasopharyngeal Microbiota Profiling of SARS-CoV-2 Infected Patients

Flavio De Maio et al.

BIOLOGICAL PROCEDURES ONLINE (2020)

Review Microbiology

Oral Microbiome and SARS-CoV-2: Beware of Lung Co-infection

Lirong Bao et al.

FRONTIERS IN MICROBIOLOGY (2020)

Article Medicine, General & Internal

Risk Factors Associated With Mortality Among Patients With COVID-19 in Intensive Care Units in Lombardy, Italy

Giacomo Grasselli et al.

JAMA INTERNAL MEDICINE (2020)

Review Public, Environmental & Occupational Health

Molecular pathogenesis of secondary bacterial infection associated to viral infections including SARS-CoV-2

Sounik Manna et al.

JOURNAL OF INFECTION AND PUBLIC HEALTH (2020)

Article Microbiology

Gut Microbiome Biomarkers and Functional Diversity Within an Amazonian Semi-Nomadic Hunter Gatherer Group

Liliane Costa Conteville et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Biotechnology & Applied Microbiology

Improved metagenomic analysis with Kraken 2

Derrick E. Wood et al.

GENOME BIOLOGY (2019)

Article Gastroenterology & Hepatology

Human gut microbiome: hopes, threats and promises

Patrice D. Cani

Article Multidisciplinary Sciences

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

Robert D. Stewart et al.

NATURE COMMUNICATIONS (2018)

Article Limnology

Estimating microbial populations by flow cytometry: Comparison between instruments

Catherine Gerikas Ribeiro et al.

LIMNOLOGY AND OCEANOGRAPHY-METHODS (2016)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Multidisciplinary Sciences

A metagenome-wide association study of gut microbiota in type 2 diabetes

Junjie Qin et al.

NATURE (2012)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Shifting the genomic gold standard for the prokaryotic species definition

Michael Richter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

The CGView Server: a comparative genomics tool for circular genomes

Jason R. Grant et al.

NUCLEIC ACIDS RESEARCH (2008)