4.7 Article

Characterization of long noncoding RNA in nonlactating goat mammary glands reveals their regulatory role in mammary cell involution and remodeling

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Integrated analysis of long non-coding RNAs and mRNAs reveals the regulatory network of maize seedling root responding to salt stress

Peng Liu et al.

Summary: Long non-coding RNAs (lncRNAs) play important roles in response to salt stress in maize, regulating the expressions of protein-coding genes and influencing salt tolerance-related functional transcripts through targeting transcription factors.

BMC GENOMICS (2022)

Article Immunology

Expression of lncRNAs in response to bacterial infections of goat mammary epithelial cells reveals insights into mammary gland diseases

Peerzada Tajamul Mumtaz et al.

Summary: This study discovered that bacterial challenge triggers the expression of lncRNAs associated with immune response and defense mechanisms in goat mammary epithelial cells.

MICROBIAL PATHOGENESIS (2022)

Article Agriculture, Dairy & Animal Science

Transcriptome profiling of the nonlactating mammary glands of dairy goats reveals the molecular genetic mechanism of mammary cell remodeling

Rong Xuan et al.

Summary: This study investigated the structural and transcriptome changes of mammary gland tissue in nonlactating dairy goats during late lactation, the dry period, and late gestation. The results showed significant structural changes and cell apoptosis in the mammary gland tissue. Transcriptome analysis identified 1,381 genes with differential expression at the three developmental stages. Genes related to cell growth, apoptosis, immunity, nutrient transport, synthesis, and metabolism exhibited adaptive transcriptional changes.

JOURNAL OF DAIRY SCIENCE (2022)

Review Biochemistry & Molecular Biology

LncRNAs in adaptive immunity: role in physiological and pathological conditions

Pedro Faria Zeni et al.

Summary: In the adaptive immune system, long non-coding RNAs (lncRNAs) play a crucial role by influencing multiple signaling pathways in lymphocyte biology, with implications for autoimmune diseases and lymphoid malignancies. Their involvement provides new insights into the orchestration of adaptive immune response.

RNA BIOLOGY (2021)

Article Genetics & Heredity

Identification of microRNA-Associated-ceRNA Networks Regulating Crop Milk Production in Pigeon (Columba livia)

Pingzhuang Ge et al.

Summary: This study investigated the miRNA expression profile of female pigeon crop milk and found key miRNAs regulating lactation. The target genes of these miRNAs are mainly involved in cell development, protein and lipid synthesis, and ion signaling processes. In the ceRNA network, miR-193-5p plays a central role in regulating lactation.
Review Cell Biology

Progress in understanding the role of lncRNA in programmed cell death

Na Jiang et al.

Summary: Long non-coding RNAs (lncRNAs) are transcripts longer than 200 nucleotides that regulate gene expressions at various levels. Studies have shown that lncRNAs are closely related to programmed cell death (PCD) and play important roles in various cancers.

CELL DEATH DISCOVERY (2021)

Review Oncology

Role of LncRNAs in regulating cancer amino acid metabolism

Yuhong Guo et al.

Summary: Tumor cells undergo metabolic reprogramming involving crucial roles of amino acid metabolism in cancer progression, with long non-coding RNAs being key players in cancer tissues and partaking in regulation by interacting with other macromolecular substances.

CANCER CELL INTERNATIONAL (2021)

Article Veterinary Sciences

chi-miR-324-3p Regulates Goat Granulosa Cell Proliferation by Targeting DENND1A

Yufang Liu et al.

Summary: GC proliferation is essential for ovulation in animals, and DENND1A is identified as a significant factor in polycystic ovary syndrome. The study demonstrates that chi-miR-324-3p inhibits GC proliferation by targeting DENND1A, as validated through various experiments.

FRONTIERS IN VETERINARY SCIENCE (2021)

Article Engineering, Environmental

Ammonia regulates chicken tracheal cell necroptosis via the LncRNA-107053293/MiR-148a-3p/FAF1 axis

Wei Wang et al.

JOURNAL OF HAZARDOUS MATERIALS (2020)

Article Multidisciplinary Sciences

A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism

Marta Pradas-Juni et al.

NATURE COMMUNICATIONS (2020)

Article Biochemistry & Molecular Biology

Identification of circRNA-Associated-ceRNA Networks Involved in Milk Fat Metabolism under Heat Stress

Dongyang Wang et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Genetics & Heredity

Exploration of Long Non-coding RNAs and Circular RNAs in Porcine Milk Exosomes

Bin Zeng et al.

FRONTIERS IN GENETICS (2020)

Article Biochemistry & Molecular Biology

Ribosomal protein S3 selectively affects colon cancer growth by modulating the levels of p53 and lactate dehydrogenase

Elie Alam et al.

MOLECULAR BIOLOGY REPORTS (2020)

Article Cardiac & Cardiovascular Systems

MiR-324-3p Regulates Fibroblast Proliferation via Targeting TGF-β1 in Atrial Fibrillation

Jiali Xu et al.

INTERNATIONAL HEART JOURNAL (2020)

Article Multidisciplinary Sciences

The long non-coding RNA LUCAT1 is a negative feedback regulator of interferon responses in humans

Shiuli Agarwal et al.

NATURE COMMUNICATIONS (2020)

Article Multidisciplinary Sciences

Structural modularity of the XIST ribonucleoprotein complex

Zhipeng Lu et al.

NATURE COMMUNICATIONS (2020)

Review Agriculture, Dairy & Animal Science

Invited review: Accelerating mammary gland involution after drying-off in dairy cattle

X. Zhao et al.

JOURNAL OF DAIRY SCIENCE (2019)

Article Biotechnology & Applied Microbiology

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Sam Kovaka et al.

GENOME BIOLOGY (2019)

Article Biochemistry & Molecular Biology

An Integrated Genome-wide CRISPRa Approach to Functionalize lncRNAs in Drug Resistance

Assaf C. Bester et al.

Article Multidisciplinary Sciences

Adipocyte hypertrophy and lipid dynamics underlie mammary gland remodeling after lactation

Rachel K. Zwick et al.

NATURE COMMUNICATIONS (2018)

Article Genetics & Heredity

Long noncoding RNA MALAT1 suppresses breast cancer metastasis

Jongchan Kim et al.

NATURE GENETICS (2018)

Review Oncology

Non-coding RNA networks in cancer

Eleni Anastasiadou et al.

NATURE REVIEWS CANCER (2018)

Article Biochemistry & Molecular Biology

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

Yu-Jian Kang et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

Zbtb7b engages the long noncoding RNA Blnc1 to drive brown and beige fat development and thermogenesis

Siming Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Oncology

LncRNA as ceRNAs may be involved in lactation process

Shuai Yu et al.

ONCOTARGET (2017)

Article Biotechnology & Applied Microbiology

Identification and characterization of long intergenic noncoding RNAs in bovine mammary glands

Chao Tong et al.

BMC GENOMICS (2017)

Article Multidisciplinary Sciences

Local regulation of gene expression by lncRNA promoters, transcription and splicing

Jesse M. Engreitz et al.

NATURE (2016)

Article Cell Biology

LncRNA NBR2 engages a metabolic checkpoint by regulating AMPK under energy stress

Xiaowen Liu et al.

NATURE CELL BIOLOGY (2016)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

ZnT2 is a critical mediator of lysosomal-mediated cell death during early mammary gland involution

Stephen R. Hennigar et al.

SCIENTIFIC REPORTS (2015)

Review Biochemistry & Molecular Biology

Non-coding RNAs: biological functions and applications

Baby Santosh et al.

CELL BIOCHEMISTRY AND FUNCTION (2015)

Review Biochemistry & Molecular Biology

Evolutionary conservation of long non-coding RNAs; sequence, structure, function

Per Johnsson et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2014)

Review Biochemistry & Molecular Biology

Regulation of mammary epithelial cell homeostasis by lncRNAs

Amy N. Shore et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2014)

Article Cell Biology

STAT signaling in mammary gland differentiation, cell survival and tumorigenesis

S. Haricharan et al.

MOLECULAR AND CELLULAR ENDOCRINOLOGY (2014)

Review Multidisciplinary Sciences

The multilayered complexity of ceRNA crosstalk and competition

Yvonne Tay et al.

NATURE (2014)

Article Biotechnology & Applied Microbiology

Normalization of RNA-seq data using factor analysis of control genes or samples

Davide Risso et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

The long noncoding RNA Neat1 is required for mammary gland development and lactation

Laura Standaert et al.

Review Genetics & Heredity

Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications

Aurelie Kapusta et al.

TRENDS IN GENETICS (2014)

Article Biochemical Research Methods

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression

Michele A. Busby et al.

BIOINFORMATICS (2013)

Article Multidisciplinary Sciences

Control of somatic tissue differentiation by the long non-coding RNA TINCR

Markus Kretz et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

Liying Yan et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Biochemistry & Molecular Biology

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

Liguo Wang et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

Liang Sun et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes

Susan Carpenter et al.

SCIENCE (2013)

Review Endocrinology & Metabolism

Molecular Mechanisms of Prolactin and Its Receptor

Charles L. Brooks

ENDOCRINE REVIEWS (2012)

Article Oncology

Noncoding RNAs Involved in Mammary Gland Development and Tumorigenesis: There's a Long Way to Go

Amy N. Shore et al.

JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Article Multidisciplinary Sciences

Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing

Paulina A. Latos et al.

SCIENCE (2012)

Editorial Material Cell Biology

Necrotic cell death: harnessing the Dark side of the Force in mammary gland involution

Cliff J. Luke et al.

NATURE CELL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer

Marjan E. Askarian-Amiri et al.

Review Biochemistry & Molecular Biology

The H19 locus: Role of an imprinted non-coding RNA in growth and development

Anne Gabory et al.

BIOESSAYS (2010)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Oncology

Diverse and Active Roles for Adipocytes During Mammary Gland Growth and Function

Russell C. Hovey et al.

JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA (2010)

Article Biotechnology & Applied Microbiology

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites

Doron Betel et al.

GENOME BIOLOGY (2010)

Article Agriculture, Dairy & Animal Science

Milking and feed restriction regulate transcripts of mammary epithelial cells purified from milk

M. Boutinaud et al.

JOURNAL OF DAIRY SCIENCE (2008)

Article Multidisciplinary Sciences

A noncoding RNA is a potential marker of cell fate during mammary gland development

MR Ginger et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Review Endocrinology & Metabolism

Focus on prolactin as a metabolic hormone

N Ben-Jonathan et al.

TRENDS IN ENDOCRINOLOGY AND METABOLISM (2006)

Review Biochemistry & Molecular Biology

Evolution of the mammary gland from the innate immune system?

Claudia Vorbach et al.

BIOESSAYS (2006)

Article Agriculture, Dairy & Animal Science

The role of IGFBP-5 in mammary gland development and involution

GJ Allan et al.

DOMESTIC ANIMAL ENDOCRINOLOGY (2004)

Article Biochemistry & Molecular Biology

Steroid receptor RNA activator stimulates proliferation as well as apoptosis in vivo

RB Lanz et al.

MOLECULAR AND CELLULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

A new mathematical model for relative quantification in real-time RT-PCR

MW Pfaffl

NUCLEIC ACIDS RESEARCH (2001)