相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Weighted gene co-expression network analysis can sort cancer-associated fibroblast-specific markers promoting bladder cancer progression
Bitian Liu et al.
JOURNAL OF CELLULAR PHYSIOLOGY (2021)
Transcriptome analysis of IPF fibroblastic foci identifies key pathways involved in fibrogenesis
Delphine Guillotin et al.
THORAX (2021)
Identification of hub genes associated with adult acute myeloid leukemia progression through weighted gene co-expression network analysis
Ruiqi Zhu et al.
Aging-US (2021)
Unraveling the genotype by environment interaction in a thermosensitive fish with a polygenic sex determination system
Benjamin Geffroy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Transcriptome analysis of the procession from chronic pancreatitis to pancreatic cancer and metastatic pancreatic cancer
Jihao Tu et al.
SCIENTIFIC REPORTS (2021)
Transcriptome Characterization of Short Distance Transport Stress in Beef Cattle Blood
Haidong Zhao et al.
FRONTIERS IN GENETICS (2021)
Diverse Regulation but Conserved Function: SOX9 in Vertebrate Sex Determination
Brittany Vining et al.
GENES (2021)
SEX DETERMINATION, GONADAL SEX DIFFERENTIATION, AND PLASTICITY IN VERTEBRATE SPECIES
Yoshitaka Nagahama et al.
PHYSIOLOGICAL REVIEWS (2021)
Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution
Katie Ovens et al.
FRONTIERS IN GENETICS (2021)
Transcriptome analysis and weighted gene co-expression network reveals potential genes responses to heat stress in turbot Scophthalmus maximus
Zhihui Huang et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS (2020)
Co-Expression Network Analysis of Spleen Transcriptome in Rock Bream (Oplegnathus fasciatus) Naturally Infected with Rock Bream Iridovirus (RBIV)
Ahran Kim et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)
Gonadal development and sex determination in mouse
Ecem Yildirim et al.
REPRODUCTIVE BIOLOGY (2020)
Molecular Signature of Subtypes of Non-Small-Cell Lung Cancer by Large-Scale Transcriptional Profiling: Identification of Key Modules and Genes by Weighted Gene Co-Expression Network Analysis (WGCNA)
Magdalena Niemira et al.
CANCERS (2020)
Dynamics of the transcriptional landscape during human fetal testis and ovary development
Estelle Lecluze et al.
HUMAN REPRODUCTION (2020)
Identification of cancer stem cell characteristics in liver hepatocellular carcinoma by WGCNA analysis of transcriptome stemness index
Kun-Hao Bai et al.
CANCER MEDICINE (2020)
Transcriptome analysis provides insights into the effects of myo-inositol on the turbot Scophthalmus maximus
Wenxiao Cui et al.
FISH & SHELLFISH IMMUNOLOGY (2020)
Use of Big Data Tools and Industrial Internet of Things: An Overview
Yingzi Wang et al.
SCIENTIFIC PROGRAMMING (2020)
Transcriptome-Based Network Analysis Unveils Eight Immune-Related Genes as Molecular Signatures in the Immunomodulatory Subtype of Triple-Negative Breast Cancer
Jinguo Zhang et al.
FRONTIERS IN ONCOLOGY (2020)
A comprehensive analysis of WGCNA and serum metabolomics manifests the lung cancer-associated disordered glucose metabolism
Mingchao Ding et al.
JOURNAL OF CELLULAR BIOCHEMISTRY (2019)
Characterization of the European Sea Bass (Dicentrarchus labrax) Gonadal Transcriptome During Sexual Development
L. Ribas et al.
MARINE BIOTECHNOLOGY (2019)
Integrative Analysis of Transcriptome and GWAS Data to Identify the Hub Genes Associated With Milk Yield Trait in Buffalo
Tingxian Deng et al.
FRONTIERS IN GENETICS (2019)
Identifying Hub Genes for Heat Tolerance in Water Buffalo (Bubalus bubalis) Using Transcriptome Data
Shenhe Liu et al.
FRONTIERS IN GENETICS (2019)
Bladder cancer stage-associated hub genes revealed by WGCNA co-expression network analysis
Yu Di et al.
HEREDITAS (2019)
A Co-expression Analysis of the Placental Transcriptome in Association With Maternal Pre-pregnancy BMI and Newborn Birth Weight
Bianca Cox et al.
FRONTIERS IN GENETICS (2019)
Identification of Biomarkers for Controlling Cancer Stem Cell Characteristics in Bladder Cancer by Network Analysis of Transcriptome Data Stemness Indices
Shen Pan et al.
FRONTIERS IN ONCOLOGY (2019)
Comprehensive Transcriptomic Analysis of Mouse Gonadal Development Involving Sexual Differentiation, Meiosis and Gametogenesis
Jian Wang et al.
BIOLOGICAL PROCEDURES ONLINE (2019)
Comparison of Methods for Differential Co-expression Analysis for Disease Biomarker Prediction
Tulika Kakati et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2019)
Identification of crucial genes in abdominal aortic aneurysm by WGCNA
Siliang Chen et al.
PEERJ (2019)
Transcriptome of Gonads From High Temperature Induced Sex Reversal During Sex Determination and Differentiation in Chinese Tongue Sole, Cynoglossus semilaevis
Qian Wang et al.
FRONTIERS IN GENETICS (2019)
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
Huaiyu Mi et al.
NUCLEIC ACIDS RESEARCH (2019)
Assessment of complementarity of WGCNA and NERI results for identification of modules associated to schizophrenia spectrum disorders
Arthur Sant'Anna Feltrin et al.
PLOS ONE (2019)
Transcriptome profiling identified differentially expressed genes and pathways associated with tamoxifen resistance in human breast cancer
Xin Men et al.
ONCOTARGET (2018)
Regulation of masculinization: androgen signalling for external genitalia development
Shoko Matsushita et al.
NATURE REVIEWS UROLOGY (2018)
Identification of Key Pathways and Genes in the Dynamic Progression of HCC Based on WGCNA
Li Yin et al.
GENES (2018)
Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model
Lyudmila Dergunova et al.
BMC GENOMICS (2018)
Transcriptome and epigenome landscape of human cortical development modeled in organoids
Anahita Amiri et al.
SCIENCE (2018)
Weighted Correlation Network Analysis (WGCNA) of Japanese Flounder (Paralichthys olivaceus) Embryo Transcriptome Provides Crucial Gene Sets for Understanding Haploid Syndrome and Rescue by Diploidization
Zhao Haitao et al.
JOURNAL OF OCEAN UNIVERSITY OF CHINA (2018)
WGCNA Reveals Key Roles of IL8 and MMP-9 in Progression of Involvement Area in Colon of Patients with Ulcerative Colitis
Xue Lin et al.
CURRENT MEDICAL SCIENCE (2018)
Weighted Gene Correlation Network Analysis (WGCNA) Detected Loss of MAGI2 Promotes Chronic Kidney Disease (CKD) by Podocyte Damage
Zhi Zuo et al.
CELLULAR PHYSIOLOGY AND BIOCHEMISTRY (2018)
MetaDCN: meta-analysis framework for differential co-expression network detection with an application in breast cancer
Li Zhu et al.
BIOINFORMATICS (2017)
Vertebrate sex determination: evolutionary plasticity of a fundamental switch
Blanche Capel
NATURE REVIEWS GENETICS (2017)
Heat-induced masculinization in domesticated zebrafish is family-specific and yields a set of different gonadal transcriptomes
Laia Ribas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Transcriptomics technologies
Rohan Lowe et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish
Emilien Voldoire et al.
PLOS ONE (2017)
Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome
Melissa S. Deist et al.
BMC GENOMICS (2017)
Glimma: interactive graphics for gene expression analysis
Shian Su et al.
BIOINFORMATICS (2017)
Conserved Anti-Mullerian Hormone: Anti-Mullerian Hormone Type-2 Receptor Specific Interaction and Intracellular Signaling in Teleosts
Ana Rocha et al.
BIOLOGY OF REPRODUCTION (2016)
A timecourse analysis of systemic and gonadal effects of temperature on sexual development of the red-eared slider turtle Trachemys scripta elegans
Michael Czerwinski et al.
DEVELOPMENTAL BIOLOGY (2016)
Integrative Analysis of Genomics and Transcriptome Data to Identify Potential Functional Genes of BMDs in Females
Yuan-Cheng Chen et al.
JOURNAL OF BONE AND MINERAL RESEARCH (2016)
Comprehensive transcriptomic analysis of the process of gonadal sex differentiation in the turbot (Scophthalmus maximus)
L. Ribas et al.
MOLECULAR AND CELLULAR ENDOCRINOLOGY (2016)
THD-Module Extractor: An Application for CEN Module Extraction and Interesting Gene Identification for Alzheimer's Disease
Tulika Kakati et al.
SCIENTIFIC REPORTS (2016)
Transcriptome analysis reveals key differentially expressed genes involved in wheat grain development
Yonglong Yu et al.
CROP JOURNAL (2016)
Effect of BMP-6 on development and maturation of mouse preantral follicles in vitro
Xiyan Wang et al.
BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT (2015)
Lasting effects of early exposure to temperature on the gonadal transcriptome at the time of sex differentiation in the European sea bass, a fish with mixed genetic and environmental sex determination
Noelia Diaz et al.
BMC GENOMICS (2015)
Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq
Katie L. Ayers et al.
BMC GENOMICS (2015)
Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks
Su-Ping Deng et al.
BMC GENOMICS (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
Transcriptome analyses reveal molecular mechanisms underlying functional recovery after spinal cord injury
Hongmei Duan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations
Ovidiu D. Iancu et al.
FRONTIERS IN GENETICS (2015)
FastRFunctions for Robust Correlations and Hierarchical Clustering
Peter Langfelder et al.
Journal of Statistical Software (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Epigenetic modification and inheritance in sexual reversal of fish
Changwei Shao et al.
GENOME RESEARCH (2014)
Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism
Simone Gupta et al.
NATURE COMMUNICATIONS (2014)
Isolation and characterization of Ff1 and Gsdf family genes in European sea bass and identification of early gonadal markers of precocious puberty in males
Berta Crespo et al.
GENERAL AND COMPARATIVE ENDOCRINOLOGY (2013)
Fine Time Course Expression Analysis Identifies Cascades of Activation and Repression and Maps a Putative Regulator of Mammalian Sex Determination
Steven C. Munger et al.
PLOS GENETICS (2013)
RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome
Katie L. Ayers et al.
GENOME BIOLOGY (2013)
Topological analysis and interactive visualization of biological networks and protein structures
Nadezhda T. Doncheva et al.
NATURE PROTOCOLS (2012)
Comparative transcriptome analysis of differentially expressed genes in foxtail millet (Setaria italica L.) during dehydration stress
Charu Lata et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2010)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules
Bruno M. Tesson et al.
BMC BIOINFORMATICS (2010)
Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways
Jeremy A. Miller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells
Mike J. Mason et al.
BMC GENOMICS (2009)
Elucidation of the transcription network governing mammalian sex determination by exploiting strain-specific susceptibility to sex reversal
Steven C. Munger et al.
GENES & DEVELOPMENT (2009)
Expression Profiles of Sex Differentiation-Related Genes During Ontogenesis in the European Sea Bass Acclimated to Two Different Temperatures
Mercedes Blazquez et al.
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
Sex-related changes in estrogen receptors and aromatase gene expression and enzymatic activity during early development and sex differentiation in the European sea bass (Dicentrarchus labrax)
Mercedes Blazquez et al.
GENERAL AND COMPARATIVE ENDOCRINOLOGY (2008)
Functional organization of the transcriptome in human brain
Michael C. Oldham et al.
NATURE NEUROSCIENCE (2008)
Geometric Interpretation of Gene Coexpression Network Analysis
Steve Horvath et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Regulation of the gonadal transcriptome during sex determination and testis morphogenesis: comparative candidate genes
Tracy M. Clement et al.
REPRODUCTION (2007)
A cDNA for European sea bass (Dicentrachus labrax) 11 beta-hydroxylase: Gene expression during the thermosensitive period and gonadogenesis
Silvia Socorro et al.
GENERAL AND COMPARATIVE ENDOCRINOLOGY (2007)
Foxl2 is required for commitment to ovary differentiation
C Ottolenghi et al.
HUMAN MOLECULAR GENETICS (2005)
Sea bass (Dicentrarchus labrax) androgen receptor:: cDNA cloning, tissue-specific expression, and mRNA levels during early development and sex differentiation
M Blázquez et al.
MOLECULAR AND CELLULAR ENDOCRINOLOGY (2005)
A general framework for weighted gene co-expression network analysis
Bin Zhang et al.
STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (2005)
Effects of population density on seabass (Dicentrarchus labrax, L.) gene expression
R Gornati et al.
AQUACULTURE (2004)
Sexual differentiation of germ cells in XX mouse gonads occurs in an anterior-to-posterior wave
DB Menke et al.
DEVELOPMENTAL BIOLOGY (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Gene expression of estrogen receptors alpha and beta during early sexual differentiation in the European sea bass (Dicentrarchus labrax)
L Rodriguez et al.
FISH PHYSIOLOGY AND BIOCHEMISTRY (2003)
Regulation of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) gene expression by gonadotropin-releasing hormone (GnRH) and sexual steroids in the Mediterranean Sea bass
J Mateos et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2002)
Characterization of neuropeptide Y expression in the brain of a perciform fish, the sea bass (Dicentrarchus labrax)
JM Cerdá-Reverter et al.
JOURNAL OF CHEMICAL NEUROANATOMY (2000)