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Summary: PLAZA is a platform for plant genomics research, integrating 134 high-quality plant genomes and offering new features and updated characteristics in the latest release. This version provides extended support for plant biologists and a versatile toolbox for plant genomics.
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Summary: The emergence of single-cell sequencing has revolutionized transcriptomic and genomic research. The lack of a comprehensive database of cell markers for plant research community has been addressed by the development of PCMDB, providing a valuable resource for researchers to annotate cell types and predict the biological function of individual cells.
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Summary: This Perspective discusses the opportunities and challenges brought by single-cell technologies in the fields of energy and environmental science, emphasizing the need to develop better and more comprehensive single-cell technologies, analysis and visualization tools, as well as tissue preparation methods. It also calls for the establishment of a centralized, open-access database to store plant single-cell data and to balance the need for deep characterization of select model species while still capturing the diversity in the plant kingdom.
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Summary: The poorly characterized SDRLK subfamily in plants is being studied through manual bio-curation, leading to corrected gene annotations and identification of candidate genes involved in plant development, pathogen resistance, and abiotic stress tolerance. The study highlights the importance of manual annotation in improving the quality and contents of public databases.
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Summary: The study introduces a weighted-nearest neighbor analysis framework to learn the relative utility of each data type in each cell, enabling integrative analysis of multiple modalities. Applied to a CITE-seq dataset, the method constructs a multimodal reference atlas of the circulating immune system and successfully identifies and validates previously unreported lymphoid subpopulations.
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Summary: Gramene is a knowledge-base focused on comparative functional analyses of genomic and pathway data for model plants and major crops, supporting agricultural researchers worldwide. They are committed to open access and reproducible science, continuously updating and expanding their content.
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