4.3 Article

The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Plant Sciences

Phylogenomic and comparative analyses of Coffeeae alliance (Rubiaceae): deep insights into phylogenetic relationships and plastome evolution

Sara Getachew Amenu et al.

Summary: This study provides detailed analysis of plastomes in the Coffeeae alliance, revealing their structural variations and phylogenetic relationships. Results show that the size and elements of plastomes are affected by the internal repeat regions, but the emerging structural variations have no significant taxonomic and phylogenetic implications. Additionally, several highly variable regions were identified as potential molecular markers for further species delimitation and population genetic analysis.

BMC PLANT BIOLOGY (2022)

Article Plant Sciences

Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica

Yves Bawin et al.

Summary: The evolutionary origin of the allotetraploid species Coffea arabica, cultivated for Arabica coffee production, was inferred through genetic distances and a time-calibrated phylogenetic tree, confirming Coffea canephora and C. eugenioides as the putative progenitor species. The hybridization event between these species likely occurred between 1.08 million and 543,000 years ago, coinciding with environmental upheaval that could have facilitated the emergence of C. arabica.

JOURNAL OF SYSTEMATICS AND EVOLUTION (2021)

Article Biochemistry & Molecular Biology

CPGAVAS2, an integrated plastome sequence annotator and analyzer

Linchun Shi et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Plant Sciences

The coffee leaf rust pathogen Hemileia vastatrix: one and a half centuries around the tropics

Pedro Talhinhas et al.

MOLECULAR PLANT PATHOLOGY (2017)

Article Biochemistry & Molecular Biology

GeSeq - versatile and accurate annotation of organelle genomes

Michael Tillich et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Review Public, Environmental & Occupational Health

Phytochemical overview and medicinal importance of Coffea species from the past until now

Eva Brigitta Patay et al.

ASIAN PACIFIC JOURNAL OF TROPICAL MEDICINE (2016)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)