4.6 Article

Comparative Analysis of the Chloroplast Genome for Aconitum Species: Genome Structure and Phylogenetic Relationships

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Genetics & Heredity

Codon usage pattern and genetic diversity in chloroplast genomes of Panicum species

Gun Li et al.

Summary: Studying the molecular identities and genetic diversity of Panicum species' chloroplast genomes is crucial for understanding gene evolutionary pressure and diversity. The analysis revealed that natural selection plays a major role in influencing the evolutionary process, and although the overall evolutionary differences among the 19 chloroplast genomes were not significant, the genetic diversity of specific genes varied with shorter sequences being more prone to instability. These findings contribute to a better understanding of the evolution of Panicum species' chloroplast genomes and provide valuable insights for further research on their evolutionary processes.
Article Multidisciplinary Sciences

Analysis of codon usage patterns of the chloroplast genome in Delphinium grandiflorum L. reveals a preference for AT-ending codons as a result major selection constraints

Huirong Duan et al.

Summary: The study on Codon usage bias in Delphinium grandiflorum revealed weak SCU bias with A/T ending preference, influenced by base composition and gene expression. Results provide insights into genetic information and evolutionary driving forces in the cp genome of D. grandiflorum.
Article Genetics & Heredity

Genomewide comparative analysis of codon usage bias in three sequenced Jatropha curcas

Zhanjun Wang et al.

Summary: Jatropha curcas has emerged as an important bioenergy plant, and the study on codon usage bias and genetic divergence in three Asian J. curcas revealed that CUB is influenced by natural selection and mutation pressure, with natural selection being the determining factor. The results indicated low intraspecific genetic divergence in the three Asian J. curcas.

JOURNAL OF GENETICS (2021)

Article Cell Biology

Analysis of codon usage bias and evolution in the chloroplast genome of Mesona chinensis Benth

Danfeng Tang et al.

Summary: The study revealed that the codon usage bias in the Mesona chinensis Benth chloroplast genome is mainly influenced by mutation and selection, with GC content significantly correlated with GC1, GC2, GC3, and ENC value; GGG, GCA, and TCC are identified as the optimal codons; closely related to Ocimum basilicum, indicating a certain correlation between codon usage bias and genetic relationship in plant species.

DEVELOPMENT GENES AND EVOLUTION (2021)

Article Biochemical Research Methods

PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes

Xiao-Jian Qu et al.

PLANT METHODS (2019)

Article Biochemistry & Molecular Biology

Comparison and Phylogenetic Analysis of Chloroplast Genomes of Three Medicinal and Edible Amomum Species

Yingxian Cui et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Genetics & Heredity

The complete chloroplast genome of Aconitum coreanum (H. Lev.) Rapaics (Ranunculaceae)

Yongsung Kim et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2019)

Article Biochemistry & Molecular Biology

Comparative Analysis of the Complete Chloroplast Genomes of Four Aconitum Medicinal Species

Jing Meng et al.

MOLECULES (2018)

Article Biochemistry & Molecular Biology

NOVOPlasty: de novo assembly of organelle genomes from whole genome data

Nicolas Dierckxsens et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

Julio Rozas et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Article Biochemical Research Methods

MISA-web: a web server for microsatellite prediction

Sebastian Beier et al.

BIOINFORMATICS (2017)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

VISTA: computational tools for comparative genomics

KA Frazer et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

REPuter: the manifold applications of repeat analysis on a genomic scale

S Kurtz et al.

NUCLEIC ACIDS RESEARCH (2001)