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Alice Cortesi et al.
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Quentin Szabo et al.
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Hui Zheng et al.
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Alessandra Dall'Agnese et al.
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Alper Kucukural et al.
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Aishwarya Sivakumar et al.
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Andrew J. Fritz et al.
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Anders S. Hansen et al.
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Ling Liu et al.
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The Trithorax protein Ash1L promotes myoblast fusion by activating Cdon expression
Ilaria Castiglioni et al.
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Sijia Liu et al.
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HiGlass: web-based visual exploration and analysis of genome interaction maps
Peter Kerpedjiev et al.
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Comparison of computational methods for the identification of topologically associating domains
Marie Zufferey et al.
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Heidi K. Norton et al.
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Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation
Houda Belaghzal et al.
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AP-1 Transcription Factors and the BAF Complex Mediate Signal-Dependent Enhancer Selection
Thomas Vierbuchen et al.
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Douglas H. Phanstiel et al.
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Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations
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Leo Machado et al.
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Cindy T. J. van Velthoven et al.
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Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro
Malina D. Doynova et al.
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Boyan Bonev et al.
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C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization
A. Rasim Barutcu et al.
JOURNAL OF CELLULAR PHYSIOLOGY (2016)
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Job Dekker et al.
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Albert E. Almada et al.
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Stage-specific effects of Notch activation during skeletal myogenesis
Pengpeng Bi et al.
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Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma
Carlos A. Aguilar et al.
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Established cell surface markers efficiently isolate highly overlapping populations of skeletal muscle satellite cells by fluorescence-activated cell sorting
Claire C. Maesner et al.
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Jixiu Shan et al.
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Chromatin architecture reorganization during stem cell differentiation
Jesse R. Dixon et al.
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Nicolas A. Dumont et al.
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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant et al.
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Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells
A. Rasim Barutcu et al.
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Alterations in Notch signalling in skeletal muscles from mdx and dko dystrophic mice and patients with Duchenne muscular dystrophy
Jarrod E. Church et al.
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Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
Francois Le Dily et al.
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Rapid depletion of muscle progenitor cells in dystrophic mdx/utrophin-/- mice
Aiping Lu et al.
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P38α MAPK underlies muscular dystrophy and myofiber death through a Bax-dependent mechanism
Erin R. Wissing et al.
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Feodor D. Price et al.
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Benjamin D. Cosgrove et al.
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p38 MAPK signaling underlies a cell-autonomous loss of stem cell self-renewal in skeletal muscle of aged mice
Jennifer D. Bernet et al.
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Genome-wide identification and characterization of functional neuronal activity-dependent enhancers
Athar N. Malik et al.
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The bone-specific Runx2-P1 promoter displays conserved three-dimensional chromatin structure with the syntenic Supt3h promoter
A. Rasim Barutcu et al.
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A Wnt-TGFβ2 axis induces a fibrogenic program in muscle stem cells from dystrophic mice
Stefano Biressi et al.
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Fedik Rahimov et al.
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eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci
Kambiz Mousavi et al.
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The Scaffold attachment factor b1 (Safb1) regulates myogenic differentiation by facilitating the transition of myogenic gene chromatin from a repressed to an activated state
J. Manuel Hernandez-Hernandez et al.
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Hang Yin et al.
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Roy Blum et al.
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Snail Regulates MyoD Binding-Site Occupancy to Direct Enhancer Switching and Differentiation-Specific Transcription in Myogenesis
Vahab D. Soleimani et al.
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The long-range interaction landscape of gene promoters
Amartya Sanyal et al.
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Joe V. Chakkalakal et al.
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Topological domains in mammalian genomes identified by analysis of chromatin interactions
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Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
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Jon-Matthew Belton et al.
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Bo Li et al.
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Guofeng Jin et al.
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NC Jones et al.
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XM Gao et al.
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H van Dam et al.
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