相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。A beginner's guide to manual curation of transposable elements
Clement Goubert et al.
MOBILE DNA (2022)
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes
Romain Feron et al.
GIGASCIENCE (2022)
Phylogenetic analyses suggest centipede venom arsenals were repeatedly stocked by horizontal gene transfer
Eivind A. B. Undheim et al.
NATURE COMMUNICATIONS (2021)
Characterization and Functional Importance of Two Glycoside Hydrolase Family 16 Genes from the Rice White Tip Nematode Aphelenchoides besseyi
Hui Feng et al.
ANIMALS (2021)
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
Mose Manni et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Discovery of a novel quinohemoprotein from a eukaryote and its application in electrochemical devices
Kouta Takeda et al.
BIOELECTROCHEMISTRY (2020)
Common structural features facilitate the simultaneous identification and quantification of the five most common juvenile hormones by liquid chromatography-tandem mass spectrometry
Cesar E. Ramirez et al.
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2020)
Widespread patterns of gene loss in the evolution of the animal kingdom
Cristina Guijarro-Clarke et al.
NATURE ECOLOGY & EVOLUTION (2020)
Gene gain and loss across the metazoan tree of life
Rosa Fernandez et al.
NATURE ECOLOGY & EVOLUTION (2020)
Aquatic stem group myriapods close a gap between molecular divergence dates and the terrestrial fossil record
Gregory D. Edgecombe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Deeply conserved synteny resolves early events in vertebrate evolution
Oleg Simakov et al.
NATURE ECOLOGY & EVOLUTION (2020)
Comparative Analysis of Genomic Repeat Content in Gomphocerine Grasshoppers Reveals Expansion of Satellite DNA and Helitrons in Species with Unusually Large Genomes
Abhijeet Shah et al.
GENOME BIOLOGY AND EVOLUTION (2020)
Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing
Wenyan Nong et al.
NATURE COMMUNICATIONS (2020)
Structural insight into the substrate specificity of Bombyx mori β-fructofuranosidase belonging to the glycoside hydrolase family 32
Takatsugu Miyazaki et al.
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2020)
Genome size evolution: towards new model systems for old questions
Julie Blommaert
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)
Millipede genomes reveal unique adaptations during myriapod evolution
Zhe Qu et al.
PLOS BIOLOGY (2020)
Diversity of Insect Sesquiterpenoid Regulation
Stacey S. K. Tsang et al.
FRONTIERS IN GENETICS (2020)
CAFE 5 models variation in evolutionary rates among gene families
Fabio K. Mendes et al.
BIOINFORMATICS (2020)
Biochemical and Functional Characterization of Glycoside Hydrolase Family 16 Genes in Aedes aegypti Larvae: Identification of the Major Digestive β-1,3-Glucanase
Raquel Santos Souza et al.
FRONTIERS IN PHYSIOLOGY (2019)
Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in Phytophaga beetles
Andre Busch et al.
BMC EVOLUTIONARY BIOLOGY (2019)
The Phylogeny and Evolutionary History of Arthropods
Gonzalo Giribet et al.
CURRENT BIOLOGY (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
The evolution of insect metamorphosis: a developmental and endocrine view
James W. Truman et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Crystal Structure of the Catalytic and Cytochrome b Domains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase
Kouta Takeda et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)
Evolution and diversity of transposable elements in fish genomes
Feng Shao et al.
SCIENTIFIC REPORTS (2019)
The Evolution of Insect Metamorphosis
James W. Truman
CURRENT BIOLOGY (2019)
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
Functional horizontal gene transfer from bacteria to eukaryotes
Filip Husnik et al.
NATURE REVIEWS MICROBIOLOGY (2018)
A rapid quantitative assay for juvenile hormones and intermediates in the biosynthetic pathway using gas chromatography tandem mass spectrometry
Zhen-peng Kai et al.
JOURNAL OF CHROMATOGRAPHY A (2018)
Juvenile hormone and sesquiterpenoids in arthropods: Biosynthesis, signaling, and role of MicroRNA
Zhe Qu et al.
JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY (2018)
Analyzing Horizontal Transfer of Transposable Elements on a Large Scale: Challenges and Prospects
Jean Peccoud et al.
BIOESSAYS (2018)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies
Venkat Talla et al.
GENOME BIOLOGY AND EVOLUTION (2017)
TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Dynamics of genome size evolution in birds and mammals
Aurelie Kapusta et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
Corinne Rancurel et al.
GENES (2017)
karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data
Bernat Gel et al.
BIOINFORMATICS (2017)
The Dfam database of repetitive DNA families
Robert Hubley et al.
NUCLEIC ACIDS RESEARCH (2016)
Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies
Roy N. Platt et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Horizontal Gene Transfer Contributes to the Evolution of Arthropod Herbivory
Nicky Wybouw et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
Nicholas H. Putnam et al.
GENOME RESEARCH (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Exploring Phylogenetic Relationships within Myriapoda and the Effects of Matrix Composition and Occupancy on Phylogenomic Reconstruction
Rosa Fernandez et al.
SYSTEMATIC BIOLOGY (2016)
Evolution of Homeobox Gene Clusters in Animals: The Giga-Cluster and Primary vs. Secondary Clustering
David E. K. Ferrier
FRONTIERS IN ECOLOGY AND EVOLUTION (2016)
Evolution of Ecdysis and Metamorphosis in Arthropods: The Rise of Regulation of Juvenile Hormone
Sam P. S. Cheong et al.
INTEGRATIVE AND COMPARATIVE BIOLOGY (2015)
Centipede Venom: Recent Discoveries and Current State of Knowledge
Eivind A. B. Undheim et al.
TOXINS (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Molecular phylogeny of Myriapoda provides insights into evolutionary patterns of the mode in post-embryonic development
Hideyuki Miyazawa et al.
SCIENTIFIC REPORTS (2014)
The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima
Ariel D. Chipman et al.
PLOS BIOLOGY (2014)
Pathview: an R/Bioconductor package for pathway-based data integration and visualization
Weijun Luo et al.
BIOINFORMATICS (2013)
Deciphering the Metabolic Changes Associated with Diapause Syndrome and Cold Acclimation in the Two-Spotted Spider Mite Tetranychus urticae
Samira Khodayari et al.
PLOS ONE (2013)
The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer
Yannick Pauchet et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Evolution of homeobox genes
Peter W. H. Holland
WILEY INTERDISCIPLINARY REVIEWS-DEVELOPMENTAL BIOLOGY (2013)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Drift and Genome Complexity Revisited
Kenneth D. Whitney et al.
PLOS GENETICS (2011)
THE LIFE HISTORY AND ECOLOGY OF THE LITTORAL CENTIPEDE STRIGAMIA (=SCOLIOPLANES) MARITIMA (LEACH)*
J. G. E. LEWIS
PROCEEDINGS OF THE ZOOLOGICAL SOCIETY OF LONDON (2010)
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
Sarah Schaack et al.
TRENDS IN ECOLOGY & EVOLUTION (2010)
Did Genetic Drift Drive Increases in Genome Complexity?
Kenneth D. Whitney et al.
PLOS GENETICS (2010)
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
Vardges Ter-Hovhannisyan et al.
GENOME RESEARCH (2008)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
Vitellogenesis in the red crab Charybdis feriatus:: Hepatopancreas-speciflic expression and farnesoic acid stimulation of vitellogenin gene expression
ASC Mak et al.
MOLECULAR REPRODUCTION AND DEVELOPMENT (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Expression patterns of the rogue Hox genes Hox3/zen and fushi tarazu in the apterygote insect Thermobia domestica
CL Hughes et al.
EVOLUTION & DEVELOPMENT (2004)
Biosynthesis of nonribosomal peptides
R Finking et al.
ANNUAL REVIEW OF MICROBIOLOGY (2004)
Ebony, a novel nonribosomal peptide synthetase for β-alanine conjugation with biogenic amines in Drosophila
A Richardt et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
MJ Sanderson
BIOINFORMATICS (2003)
Hox genes and the evolution of the arthropod body plan
CL Hughes et al.
EVOLUTION & DEVELOPMENT (2002)
Pyrroloquinoline quinone (PQQ) and quinoprotein enzymes
C Anthony
ANTIOXIDANTS & REDOX SIGNALING (2001)
分享论文
