☆ 4.7 Review

Synergy between microalgae and microbiome in polluted waters

TRENDS IN MICROBIOLOGY (2023)

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Review Chemistry, Multidisciplinary

Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants

Nader Ghassemi et al.

Summary: ECMs play a crucial role in supporting cell integrity and function, as well as in regulating intercellular communication, and are of interest for biofuel production and antimicrobial treatments. Techniques such as ssNMR and MAS-DNP are powerful for understanding the structure and dynamics of carbohydrates and biomolecules in ECMs. Recent high-resolution investigations have revealed structural principles in ECMs across various organisms, and advancements in ssNMR technology offer promising opportunities for further exploration of biochemical topics.

CHEMICAL REVIEWS (2022)

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Article Ecology

Bacterial response to spatial gradients of algal-derived nutrients in a porous microplate

Hyungseok Kim et al.

Summary: Photosynthetic microalgae are important for fixing CO2 and have potential as a renewable bioenergy source. By studying the metabolic interactions between microorganisms, this research explores the factors influencing community development. The novel system provides a useful tool for investigating metabolic interactions between microbes in aquatic ecosystems.

ISME JOURNAL (2022)

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Article Ecology

Intraspecific variation in metal tolerance modulate competition between two marine diatoms

Bjorn Andersson et al.

Summary: This study utilized co-cultivation experiments and models to predict the effects of different metals on marine phytoplankton, finding that certain species may gain a competitive advantage under toxic stress. The importance of incorporating multiple strains in microbial competition experiments was highlighted in the research findings.

ISME JOURNAL (2022)

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Article Ecology

Extracellular Polymeric Substances Drive Symbiotic Interactions in Bacterial-Microalgal Consortia

Isiri Adhiwarie Perera et al.

Summary: This study focused on the influence of extracellular polymeric substances (EPS) on the symbiotic interactions between bacteria and microalgae in consortia. The findings revealed mutualism between V. paradoxus IS1 and T. obliquus IS2, while commensalism was observed between the bacterial strain and Coelastrella sp. IS3. EPS played a crucial role in facilitating interspecies interactions in bacterial-microalgal consortia.

MICROBIAL ECOLOGY (2022)

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Article Chemistry, Multidisciplinary

Widespread Sterol Methyltransferase Participates in the Biosynthesis of Both C4?- and C4?-Methyl Sterols

Wenxu Zhou et al.

Summary: The 4-methyl steranes are molecular fossils used to study eukaryotic evolution and geological history. Previously, the presence of 4 alpha-methyl steranes in sediments was considered evidence of partial demethylation mediated by sterol methyl oxidases, while 4 beta-methyl steranes were thought to be entirely generated from 4 alpha-methyl steroids. However, researchers have now discovered a previously unknown biosynthetic pathway involving a sterol methyltransferase. This finding provides a new route for the generation of C4-methyl steranes and challenges the previous understanding.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2022)

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Review Ecology

Bacterial cooperation through horizontal gene transfer

Isaiah Paolo A. Lee et al.

Summary: Cooperation exists at all levels of biological organization, with bacteria cooperating by secreting beneficial molecules for the whole population. Recent findings show that mobile genetic elements promote bacterial cooperation through horizontal gene transfer (HGT), and cooperation can facilitate more frequent HGT. HGT itself can be considered as a form of cooperation and serves as an important enforcement mechanism in bacterial populations.

TRENDS IN ECOLOGY & EVOLUTION (2022)

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Review Biochemistry & Molecular Biology

Bacterial quorum sensing and phenotypic heterogeneity: how the collective shapes the individual

Bianca Striednig et al.

Summary: Bacteria communicate through autoinducers, small organic molecules, and quorum sensing coordinates both group behavior and individual phenotypic heterogeneity, thereby increasing the overall fitness of bacterial populations.

TRENDS IN MICROBIOLOGY (2022)

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Review Chemistry, Multidisciplinary

Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants

Nader Ghassemi et al.

Summary: Extracellular matrixes play a vital role in supporting cell function, biofuel production, and antimicrobial treatment. Solid-state nuclear magnetic resonance and magic-angle spinning-dynamic nuclear polarization are powerful tools for studying biomolecules in ECMs, offering promising opportunities for further research and development.

CHEMICAL REVIEWS (2022)

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Article Ecology

Host specificity of microbiome assembly and its fitness effects in phytoplankton

Sara L. Jackrel et al.

Summary: Insights into symbiosis between eukaryotic hosts and their microbiomes have led to a paradigm shift in understanding the factors influencing host fitness, ecology, and behavior. The study on phytoplankton as a model system demonstrates that microbiomes play a host-specific role and impact host fitness, with host factors being more influential than environmental factors in shaping microbiome composition. The temporal dynamics of microbiome composition and fitness effects emphasize the importance of host specificity in microbiome-host interactions.

ISME JOURNAL (2021)

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Article Agricultural Engineering

Adapting the algal microbiome for growth on domestic landfill leachate

Katarzyna Okurowska et al.

Summary: By enriching an algal-bacterial consortium from landfill leachate and subjecting it to adaptive laboratory evolution, this study successfully increased the growth rate of the dominant algal strain, Chlorella vulgaris. The reduction in nitrate production and the shift in biological utilisation of ammoniacal-N were supported by taxonomic analyses, and a high number of sequences belonging to bioremediation pathways were predicted by a PICRUSt approach. This study enhances our understanding of beneficial mechanisms in algal-bacterial associations and enables the design of optimised algal microbiomes for industrial exploitation.

BIORESOURCE TECHNOLOGY (2021)

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Review Environmental Sciences

Microalgae-based technology for antibiotics removal: From mechanisms to application of innovational hybrid systems

Qian Xiong et al.

Summary: This review discusses the mechanisms of antibiotics removal by microalgae, including bioadsorption, bioaccumulation, and biodegradation, as well as factors affecting removal efficiency and novel approaches to enhance it. Hybrid systems and genetic engineering are recommended for improved removal, highlighting the need for further optimization and expansion of application in largescale settings.

ENVIRONMENT INTERNATIONAL (2021)

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Review Plant Sciences

Reuniting the Biogeochemistry of Algae for a Low-Carbon Circular Bioeconomy

Yoong Kit Leong et al.

Summary: Algae, with their high photosynthetic efficiency and unique characteristics, are seen as a promising solution for addressing energy, food security, and pollution issues. They can be utilized as valuable feedstock for biofuels, food and feeds, biochemicals, and biomaterials, with innovative technologies and low-carbon circular bioeconomy models being applied to achieve carbon capture, low-carbon feedstocks, and sustainable development.

TRENDS IN PLANT SCIENCE (2021)

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Review Biotechnology & Applied Microbiology

Prospects and development of algal-bacterial biotechnology in environmental management and protection

Jasmine Jill Jia Yi Yong et al.

Summary: The coexistence of algae and bacteria has been long-standing and plays a crucial role in the planet ecology. Algal-bacterial consortia show great potential in areas like environmental remediation, biorefinery, carbon sequestration, and high-value compound production, but face challenges that require further research to ensure environmental sustainability and feasibility.

BIOTECHNOLOGY ADVANCES (2021)

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Article Green & Sustainable Science & Technology

Cadmium-effect on performance and symbiotic relationship of microalgal-bacterial granules

Shulian Wang et al.

Summary: The study found that Cd2+ can compromise the performance of microalgal-bacterial granules, leading to a decrease in organic and nitrogen removal efficiency. Nitrifying bacteria are sensitive to Cd2+, which can also stimulate the production of extracellular polymeric substances.

JOURNAL OF CLEANER PRODUCTION (2021)

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Article Environmental Sciences

Sustainable development of microalgal biotechnology in coastal zone for aquaculture and food

Xiangning Lu et al.

Summary: Region-specific research and development of microalga-derived product systems are crucial for exploring biotech's green gold in a rational and economically viable way. Coastal zones, particularly around the equator, are considered optimal cultivation sites due to stable annual temperature, light, and seawater availability. This study demonstrated the viability of microalga-derived multi-product technology in coastal zones, showing the robust growth of a Chlorella strain MEM25 across different production system designs and various spatial and temporal scales.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

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Article Multidisciplinary Sciences

Role of an ancient light-harvesting protein of PSI in light absorption and photoprotection

Yandu Lu et al.

Summary: The study found that LHCR proteins play a key role in red algae, affecting the balance between photoprotection and light harvesting in photosynthesis. The mutant hlr1 shows increased tolerance to high light due to reduced oxidative stress in PSI, limiting oxidative damage and promoting growth. However, under low light conditions, HLR1 deficiency reduces PSI light-harvesting capacity and growth.

NATURE COMMUNICATIONS (2021)

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Article Microbiology

Temperature Stress Induces Shift From Co-Existence to Competition for Organic Carbon in Microalgae-Bacterial Photobioreactor Community - Enabling Continuous Production of Microalgal Biomass

Eva Sorenson et al.

Summary: Understanding the mechanisms behind community resilience in response to environmental changes in aquatic microbial ecosystems involves considering concepts of biotic interactions, functional adaptations, and community structure. By combining these concepts with ecological theories, we can explore how microbial communities maintain their function and diversity when exposed to stressors.

FRONTIERS IN MICROBIOLOGY (2021)

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Review Environmental Sciences

Pollutants affect algae-bacteria interactions: A critical review

Xiuqi You et al.

Summary: This review discusses the interactions between algae and bacteria in the presence of pollutants, as well as the mechanisms through which pollutants affect their physiological and ecological functions. Future research should focus on developing suitable algal-bacterial models, identifying cross-kingdom signaling molecules, and deciphering the horizontal transfer of pollutant resistant genes between algae and bacteria under pollution stress.

ENVIRONMENTAL POLLUTION (2021)

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Review Biochemistry & Molecular Biology

Enhancing Microbial Pollutant Degradation by Integrating Eco-Evolutionary Principles with Environmental Biotechnology

Erik Borchert et al.

Summary: Significant progress in the biodegradation of anthropogenic pollutants can be achieved by harnessing artificial community selection based on eco-evolutionary principles. These selected communities can be used directly in bioremediation applications or further analyzed and modified through systems biology, synthetic biology, and genetic engineering, leading to the discovery of novel biodegradation pathways.

TRENDS IN MICROBIOLOGY (2021)

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Review Biotechnology & Applied Microbiology

Engineering microalgae: transition from empirical design to programmable cells

Yandu Lu et al.

Summary: The field of microalgal engineering has seen rapid advancement from single-gene and enzyme-based metabolic engineering to systems-level precision engineering. Through quantitative transformation cassette design and target editing methods, high yields of valuable products can be achieved.

CRITICAL REVIEWS IN BIOTECHNOLOGY (2021)

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Article Physics, Multidisciplinary

Viscophobic turning dictates microalgae transport in viscosity gradients

Michael R. Stehnach et al.

Summary: This passage discusses how the competition between viscophobic turning and viscous slowdown dictates the fate of population-scale microbial transport in viscosity gradients. This is primarily due to lack of quantitative observations in understanding the physical mechanisms regulating cell transport in viscosity gradients. Through microfluidic experiments, they directly observed the transport of model biflagellated microalgae in controlled viscosity gradients, showing that cell accumulation in the viscous region is stifled by a viscophobic turning motility.

NATURE PHYSICS (2021)

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Article Environmental Sciences

Transcriptome analysis expands the potential roles of quorum sensing in biodegradation and physiological responses to microcystin

Yan-Hua Zeng et al.

Summary: This study identified QS-regulated genes that mainly influence metabolism-associated pathways, including amino acid metabolism, carbohydrate metabolism, and biodegradation and metabolism of xenobiotics, during the degradation of MCs.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

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Review Microbiology

Bacteria, Fungi and Microalgae for the Bioremediation of Marine Sediments Contaminated by Petroleum Hydrocarbons in the Omics Era

Filippo Dell' Anno et al.

Summary: Petroleum hydrocarbons (PHCs) are a common and diverse pollutant in marine ecosystems, posing a major threat to the environment and human health. Bioremediation approaches utilizing microorganisms, particularly bacteria, fungi, and microalgae, are gaining attention for their eco-friendly nature and cost-effectiveness in treating marine sediment contaminated by PHCs. Innovative molecular approaches are being explored to enhance the effectiveness of these microbial-based reclamation strategies.

MICROORGANISMS (2021)

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Article Engineering, Environmental

Aeration-induced CO2 stripping, instead of high dissolved oxygen, have a negative impact on algae-bacteria symbiosis (ABS) system stability and wastewater treatment efficiency

Han Zhang et al.

CHEMICAL ENGINEERING JOURNAL (2020)

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Article Agricultural Engineering

Application of aerobic granules-continuous flow reactor for saline wastewater treatment: Granular stability, lipid production and symbiotic relationship between bacteria and algae

Fansheng Meng et al.

BIORESOURCE TECHNOLOGY (2020)

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Review Environmental Sciences

Use of microalgae based technology for the removal of antibiotics from wastewater: A review

Lijian Leng et al.

CHEMOSPHERE (2020)

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Article Environmental Sciences

Insights into the transcriptional responses of a microbial community to silver nanoparticles in a freshwater microcosm

Tao Lu et al.

ENVIRONMENTAL POLLUTION (2020)

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Review Biochemistry & Molecular Biology

Flexibility and Adaptability of Quorum Sensing in Nature

Rebecca D. Prescott et al.

TRENDS IN MICROBIOLOGY (2020)

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Article Agricultural Engineering

Defensive responses of microalgal-bacterial granules to tetracycline in municipal wastewater treatment

Shulian Wang et al.

BIORESOURCE TECHNOLOGY (2020)

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Article Environmental Sciences

Understanding the influence of glyphosate on the structure and function of freshwater microbial community in a microcosm

Tao Lu et al.

ENVIRONMENTAL POLLUTION (2020)

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Article Ecology

The microbiome of alpine snow algae shows a specific inter-kingdom connectivity and algae-bacteria interactions with supportive capacities

Lisa Krug et al.

ISME JOURNAL (2020)

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Article Ecology

Niche-based assembly of bacterial consortia on the diatom Thalassiosira rotula is stable and reproducible

Julian Moennich et al.

ISME JOURNAL (2020)

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Review Biotechnology & Applied Microbiology

Using Microbial Aggregates to Entrap Aqueous Phosphorus

Ying Xu et al.

TRENDS IN BIOTECHNOLOGY (2020)

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Microbiome-Mediated Stress Resistance in Plants

Hongwei Liu et al.

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Lichen-like association ofChlamydomonas reinhardtiiandAspergillus nidulansprotects algal cells from bacteria

Mario K. C. Krespach et al.

ISME JOURNAL (2020)

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Review Genetics & Heredity

Horizontal Gene Transfer in Eukaryotes: Not if, but How Much?

Julia Van Etten et al.

TRENDS IN GENETICS (2020)

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Article Engineering, Environmental

Responses of freshwater biofilm formation processes (from colonization to maturity) to anatase and rutile TiO2 nanoparticles: Effects of nanoparticles aging and transformation

Kun Li et al.

WATER RESEARCH (2020)

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Review Microbiology

The role of microbial motility and chemotaxis in symbiosis

Jean-Baptiste Raina et al.

NATURE REVIEWS MICROBIOLOGY (2019)

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Algae-bacteria interactions that balance the planktonic microbiome

Emilio Cirri et al.

NEW PHYTOLOGIST (2019)

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Multi-omics response of Pannonibacter phragmitetus BB to hexavalent chromium

Liyuan Chai et al.

ENVIRONMENTAL POLLUTION (2019)

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Insights into the Fate and Removal of Antibiotics in Engineered Biological Treatment Systems: A Critical Review

Akashdeep Singh Oberoi et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2019)

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Article Biotechnology & Applied Microbiology

Azospirillum brasilense-microalga interaction increases growth and accumulation of cell compounds in Chlorella vulgaris and Tetradesmus obliquus cultured under nitrogen stress

Jose Roberto Ramos-Ibarra et al.

JOURNAL OF APPLIED PHYCOLOGY (2019)

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Review Biotechnology & Applied Microbiology

New Prospects for Modified Algae in Heavy Metal Adsorption

Sze Yin Cheng et al.

TRENDS IN BIOTECHNOLOGY (2019)

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Review Plant Sciences

Microalgal Aquafeeds As Part of a Circular Bioeconomy

Jennifer Yarnold et al.

TRENDS IN PLANT SCIENCE (2019)

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Article Biotechnology & Applied Microbiology

Host selection and stochastic effects influence bacterial community assembly on the microalgal phycosphere

Jeffrey A. Kimbrel et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2019)

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The response of Prorocentrum sigmoides and its associated culturable bacteria to metals and organic pollutants

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The fungicide azoxystrobin promotes freshwater cyanobacterial dominance through altering competition

Tao Lu et al.

MICROBIOME (2019)

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Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution

Shifeng Cheng et al.

CELL (2019)

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Pyrene metabolites by bacterium enhancing cell division of green alga Selenastrum capricornutum

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SCIENCE OF THE TOTAL ENVIRONMENT (2019)

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Effects of carboxyl single-walled carbon nanotubes on synthetic wastewater nutrient removal by an algal-bacterial consortium: Regulation and interaction

Xiyan Ji et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

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Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities

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NATURE MICROBIOLOGY (2019)

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Understanding the antifouling mechanisms related to copper oxide and zinc oxide nanoparticles in anaerobic membrane bioreactors

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ENVIRONMENTAL SCIENCE-NANO (2019)

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Review Microbiology

Mini-review: Phytoplankton-derived polysaccharides in the marine environment and their interactions with heterotrophic bacteria

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ENVIRONMENTAL MICROBIOLOGY (2018)

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Review Biotechnology & Applied Microbiology

How Microbial Aggregates Protect against Nanoparticle Toxicity

Jun Tang et al.

TRENDS IN BIOTECHNOLOGY (2018)

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Review Biochemistry & Molecular Biology

Antibiotic-Resistance Genes in Waste Water

Antti Karkman et al.

TRENDS IN MICROBIOLOGY (2018)

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Responses of wastewater biofilms to chronic CeO2 nanoparticles exposure: Structural, physicochemical and microbial properties and potential mechanism

Peifang Wang et al.

WATER RESEARCH (2018)

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Article Biotechnology & Applied Microbiology

Bacterial community changes in an industrial algae production system

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ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2018)

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The metabolite dimethylsulfoxonium propionate extends the marine organosulfur cycle

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NATURE (2018)

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Review Biotechnology & Applied Microbiology

Microalgae-bacteria biofilms: a sustainable synergistic approach in remediation of acid mine drainage

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APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

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Effects of silver sulfide nanoparticles on the microbial community structure and biological activity of freshwater biofilms

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ENVIRONMENTAL SCIENCE-NANO (2018)

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Horizontal Gene Transfer of Phytochelatin Synthases from Bacteria to Extremophilic Green Algae

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MICROBIAL ECOLOGY (2017)

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Responses of Periphyton to Fe2O3 Nanoparticles: A Physiological and Ecological Basis for Defending Nanotoxicity

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Acidophilic green algal genome provides insights into adaptation to an acidic environment

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A customized contamination controlling approach for culturing oleaginous Nannochloropsis oceanica

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Metagenomic analysis of the complex microbial consortium associated with cultures of the oil-rich alga Botryococcus braunii

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Zooming in on the phycosphere: the ecological interface for phytoplankton-bacteria relationships

Justin R. Seymour et al.

NATURE MICROBIOLOGY (2017)

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Pollution-induced community tolerance (PICT): towards an ecologically relevant risk assessment of chemicals in aquatic systems

Ahmed Tlili et al.

FRESHWATER BIOLOGY (2016)

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Review Biotechnology & Applied Microbiology

Algae-bacteria interactions: Evolution, ecology and emerging applications

Rishiram Ramanan et al.

BIOTECHNOLOGY ADVANCES (2016)

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Review Plant Sciences

Quorum Sensing Is a Language of Chemical Signals and Plays an Ecological Role in Algal-Bacterial Interactions

Jin Zhou et al.

CRITICAL REVIEWS IN PLANT SCIENCES (2016)

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Article Multidisciplinary Sciences

Chemotaxis toward phytoplankton drives organic matter partitioning among marine bacteria

Steven Smriga et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

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Article Biotechnology & Applied Microbiology

Pond Crash Forensics: Presumptive identification of pond crash agents by next generation sequencing in replicate raceway mass cultures of Nannochloropsis salina

Laura T. Carney et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2016)

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Article Microbiology

The Vitamin B1 and B12 Required by the Marine Dinoflagellate Lingulodinium polyedrum Can Be Provided by Its Associated Bacterial Community in Culture

Ricardo Cruz-Lopez et al.

FRONTIERS IN MICROBIOLOGY (2016)

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Article Chemistry, Multidisciplinary

Complex organic corona formation on carbon nanotubes reduces microbial toxicity by suppressing reactive oxygen species production

J. R. Lawrence et al.

ENVIRONMENTAL SCIENCE-NANO (2016)

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Article Microbiology

Tryptophan, thiamine and indole-3-acetic acid exchange between Chlorella sorokiniana and the plant growth-promoting bacterium Azospirillum brasilense

Oskar A. Palacios et al.

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Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

S. A. Amin et al.

NATURE (2015)

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Sublethal Concentrations of Silver Nanoparticles Stimulate Biofilm Development

Yu Yang et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY LETTERS (2015)

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Azotobacter vinelandii siderophore can provide nitrogen to support the culture of the green algae Neochloris oleoabundans and Scenedesmus sp BA032

Juan A. Villa et al.

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Article Biochemical Research Methods

Shotgun Proteomic Analysis Unveils Survival and Detoxification Strategies by Caulobacter crescentus during Exposure to Uranium, Chromium, and Cadmium

Mimi C. Yung et al.

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Hybrid Biosynthesis of Roseobacticides from Algal and Bacterial Precursor Molecules

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JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

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Metagenome Survey of a Multispecies and Alga-Associated Biofilm Revealed Key Elements of Bacterial-Algal Interactions in Photobioreactors

Ines Krohn-Molt et al.

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Bacterial community composition associated with freshwater algae: species specificity vs. dependency on environmental conditions and source community

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Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote

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Most harmful algal bloom species are vitamin B1 and B12 auxotrophs

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Marine diatom species harbour distinct bacterial communities

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Chlamydomonas reinhardtii secretes compounds that mimic bacterial signals and interfere with quorum sensing regulation in bacteria

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