相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。An emerging mechanism for the maturation of the Small Subunit Processome
Arnaud Vanden Broeck et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2022)
The DExD box ATPase DDX55 is recruited to domain IV of the 28S ribosomal RNA by its C-terminal region
Priyanka Choudhury et al.
RNA BIOLOGY (2021)
The G-patch activators Pfa1 and PINX1 exhibit different modes of interaction with the Prp43 RNA helicase
Saida Mouffok et al.
RNA BIOLOGY (2021)
Regulation of DEAH-box RNA helicases by G-patch proteins
Katherine E. Bohnsack et al.
BIOLOGICAL CHEMISTRY (2021)
Structure of the Maturing 90S Pre-ribosome in Association with the RNA Exosome
Benjamin Lau et al.
MOLECULAR CELL (2021)
The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly
Gerald Ryan R. Aquino et al.
NATURE COMMUNICATIONS (2021)
Association of snR190 snoRNA chaperone with early pre-60S particles is regulated by the RNA helicase Dbp7 in yeast
Mariam Jaafar et al.
NATURE COMMUNICATIONS (2021)
Structural overview of macromolecular machines involved in ribosome biogenesis
Meredith N. Frazier et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2021)
RNA helicase-mediated regulation of snoRNP dynamics on pre-ribosomes and rRNA 2′-O-methylation
Gerald Ryan R. Aquino et al.
NUCLEIC ACIDS RESEARCH (2021)
Structural basis for the activation of the DEAD-box RNA helicase DbpA by the nascent ribosome
Jan Philip Wurm et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Nucleolar maturation of the human small subunit processome
Sameer Singh et al.
SCIENCE (2021)
A roadmap for rRNA folding and assembly during transcription
Margaret L. Rodgers et al.
TRENDS IN BIOCHEMICAL SCIENCES (2021)
Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy
Ramtin Shayan et al.
MOLECULES (2020)
Sgd1 is an MIF4G domain-containing cofactor of the RNA helicase Fal1 and associates with the 5' domain of the 18S rRNA sequence
Jimena Davila Gallesio et al.
RNA BIOLOGY (2020)
The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers
Purnima Klingauf-Nerurkar et al.
ELIFE (2020)
From Snapshots to Flipbook-Resolving the Dynamics of Ribosome Biogenesis with Chemical Probes
Lisa Kofler et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)
Structural basis for DEAH-helicase activation by G-patch proteins
Michael K. Studer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis
Lukas Kater et al.
MOLECULAR CELL (2020)
Substrate specificity of the TRAMP nuclear surveillance complexes
Clementine Delan-Forino et al.
NATURE COMMUNICATIONS (2020)
Coupling of 5S RNP rotation with maturation of functional centers during large ribosomal subunit assembly
Jelena Micic et al.
NATURE COMMUNICATIONS (2020)
Structural snapshots of human pre-60S ribosomal particles before and after nuclear export
Xiaomeng Liang et al.
NATURE COMMUNICATIONS (2020)
Quality control of 40S ribosome head assembly ensures scanning competence
Haina Huang et al.
JOURNAL OF CELL BIOLOGY (2020)
2′'-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states
Hala Abou Assi et al.
NUCLEIC ACIDS RESEARCH (2020)
90S pre-ribosome transformation into the primordial 40S subunit
Jingdong Cheng et al.
SCIENCE (2020)
Cryo-EM structure of 90S small ribosomal subunit precursors in transition states
Yifei Du et al.
SCIENCE (2020)
snR30/U17 Small Nucleolar Ribonucleoprotein: A Critical Player during Ribosome Biogenesis
Timothy John Vos et al.
CELLS (2020)
Structural basis for the final steps of human 40S ribosome maturation
Michael Ameismeier et al.
NATURE (2020)
Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
Joshua J. Black et al.
PLOS GENETICS (2020)
Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate
Dejian Zhou et al.
PROTEIN & CELL (2019)
Structural basis for RNA translocation by DEAH-box ATPases
Florian Hamann et al.
NUCLEIC ACIDS RESEARCH (2019)
Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis
Franziska M. Boneberg et al.
RNA (2019)
Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome
Yi Zhou et al.
NATURE COMMUNICATIONS (2019)
Uncovering the assembly pathway of human ribosomes and its emerging links to disease
Katherine E. Bohnsack et al.
EMBO JOURNAL (2019)
Mechanism of completion of peptidyltransferase centre assembly in eukaryotes
Vasileios Kargas et al.
ELIFE (2019)
The DEAH-box RNA helicase Dhr1 contains a remarkable carboxyl terminal domain essential for small ribosomal subunit biogenesis
Amlan Roychowdhury et al.
NUCLEIC ACIDS RESEARCH (2019)
Conformational proofreading of distant 40S ribosomal subunit maturation events by a long-range communication mechanism
Valentin Mitterer et al.
NATURE COMMUNICATIONS (2019)
The MTR4 helicase recruits nuclear adaptors of the human RNA exosome using distinct arch-interacting motifs
Mahesh Lingaraju et al.
NATURE COMMUNICATIONS (2019)
Conformational switches control early maturation of the eukaryotic small ribosomal subunit
Mirjam Hunziker et al.
ELIFE (2019)
Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration
Jingdong Cheng et al.
MOLECULAR CELL (2019)
At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis
Sivakumar Vadivel Gnanasundram et al.
NUCLEIC ACIDS RESEARCH (2019)
Transcription Increases the Cooperativity of Ribonucleoprotein Assembly
Margaret L. Rodgers et al.
CELL (2019)
Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding
Olivier Duss et al.
CELL (2019)
Eukaryotic Ribosome Assembly
Jochen Bassler et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 88 (2019)
Ribosome assembly coming into focus
Sebastian Klinge et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)
The human RNA helicase DHX37 is required for release of the U3 snoRNP from pre-ribosomal particles
Priyanka Choudhury et al.
RNA BIOLOGY (2019)
A kinase-dependent checkpoint prevents escape of immature ribosomes into the translating pool
Melissa D. Parker et al.
PLOS BIOLOGY (2019)
The SSU processome interactome in Saccharomyces cerevisiae reveals novel protein subcomplexes
Nicholas G. Vincent et al.
RNA (2018)
Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
Alain Scaiola et al.
EMBO JOURNAL (2018)
Modular assembly of the nucleolar pre-60S ribosomal subunit
Zahra Assur Sanghai et al.
NATURE (2018)
Structural and functional analysis of ribosome assembly factor Efg1
Sheng Shu et al.
NUCLEIC ACIDS RESEARCH (2018)
Utp14 interaction with the small subunit processome
Joshua J. Black et al.
RNA (2018)
Structure of the nuclear exosome captured on a maturing preribosome
Jan Michael Schuller et al.
SCIENCE (2018)
Visualizing late states of human 40S ribosomal subunit maturation
Michael Ameismeier et al.
NATURE (2018)
The DEAD-box protein Dbp2p is linked to noncoding RNAs, the helicase Sen1p, and R-loops
Frank A. Tedeschi et al.
RNA (2018)
The Npa1p complex chaperones the assembly of the earliest eukaryotic large ribosomal subunit precursor
Clément Joret et al.
PLoS Genetics (2018)
RNA helicases mediate structural transitions and compositional changes in pre-ribosomal complexes
Lukas Bruning et al.
NATURE COMMUNICATIONS (2018)
The Rrp6 C-terminal domain binds RNA and activates the nuclear RNA exosome
Elizabeth V. Wasmuth et al.
NUCLEIC ACIDS RESEARCH (2017)
Architecture of the yeast small subunit processome
Malik Chaker-Margot et al.
SCIENCE (2017)
The ATPase Fap7 Tests the Ability to Carry Out Translocation-like Conformational Changes and Releases Dim1 during 40S Ribosome Maturation
Homa Ghalei et al.
MOLECULAR CELL (2017)
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1
Chengying Ma et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage
Jingdong Cheng et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
The complete structure of the small-subunit processome
Jonas Barandun et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
The Rio1p ATPase hinders premature entry into translation of late pre-40S pre-ribosomal particles
Kamila Belhabich-Baumas et al.
NUCLEIC ACIDS RESEARCH (2017)
Characterization of the mammalian DEAD-box protein DDX5 reveals functional conservation with S. cerevisiae ortholog Dbp2 in transcriptional control and glucose metabolism
Zheng Xing et al.
RNA (2017)
Structural landscape of base pairs containing post transcriptional modifications in RNA
Preethi P. Seelam et al.
RNA (2017)
Structure of the DEAH/RHA ATPase Prp43p bound to RNA implicates a pair of hairpins and motif Va in translocation along RNA
Yangzi He et al.
RNA (2017)
A Puzzle of Life: Crafting Ribosomal Subunits
Dieter Kressler et al.
TRENDS IN BIOCHEMICAL SCIENCES (2017)
Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly
Miriam Sturm et al.
NATURE COMMUNICATIONS (2017)
High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast
Elena Burlacu et al.
NATURE COMMUNICATIONS (2017)
Reconstitution of the complete pathway of ITS2 processing at the pre-ribosome
Lisa Fromm et al.
NATURE COMMUNICATIONS (2017)
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1
Chengying Ma et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage
Jingdong Cheng et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
The complete structure of the small-subunit processome
Jonas Barandun et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
Molecular architecture of the 90S small subunit pre-ribosome
Qi Sun et al.
ELIFE (2017)
Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
Andre Heuer et al.
ELIFE (2017)
Structural insights into the mechanism of the DEAH-box RNA helicase Prp43
Marcel J. Tauchert et al.
ELIFE (2017)
The crystal structure of human DEAH-box RNA helicase 15 reveals a domain organization of the mammalian DEAH/RHA family
Karin Murakami et al.
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2017)
Distinct RNA-unwinding mechanisms of DEAD-box and DEAH-box RNA helicase proteins in remodeling structured RNAs and RNPs
Benjamin Gilman et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2017)
Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes
Lukas Kater et al.
CELL (2017)
Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis
Andrey G. Malyutin et al.
EMBO JOURNAL (2017)
Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-ribosome remodeling
Clara Barrio-Garcia et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Concerted removal of the Erb1-Ytm1 complex in ribosome biogenesis relies on an elaborate interface
Matthias Thoms et al.
NUCLEIC ACIDS RESEARCH (2016)
Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-ribosome remodeling
Clara Barrio-Garcia et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation
Basil Johannes Greber et al.
CELL (2016)
Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome
Markus Kornprobst et al.
CELL (2016)
Modular Assembly of the Bacterial Large Ribosomal Subunit
Joseph H. Davis et al.
CELL (2016)
Spliceosomal DEAH-Box ATPases Remodel Pre-mRNA to Activate Alternative Splice Sites
Daniel R. Semlow et al.
CELL (2016)
Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast
Liman Zhang et al.
GENES & DEVELOPMENT (2016)
Recruitment, Duplex Unwinding and Protein-Mediated Inhibition of the Dead-Box RNA Helicase Dbp2 at Actively Transcribed Chromatin
Wai Kit Ma et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Utp14 Recruits and Activates the RNA Helicase Dhr1 To Undock U3 snoRNA from the Preribosome
Jieyi Zhu et al.
MOLECULAR AND CELLULAR BIOLOGY (2016)
Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless Blocked by Double-Stranded RNA Structure
Maxime Wery et al.
MOLECULAR CELL (2016)
Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes
Shan Wu et al.
NATURE (2016)
Ribosome-stalk biogenesis is coupled with recruitment of nuclear-export factor to the nascent 60S subunit
Anshuk Sarkar et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans (vol 44, pg 5399, 2016)
Graeme R. Wells et al.
NUCLEIC ACIDS RESEARCH (2016)
The K+-dependent GTPase Nug1 is implicated in the association of the helicase Dbp10 to the immature peptidyl transferase centre during ribosome maturation
Rizos-Georgios Manikas et al.
NUCLEIC ACIDS RESEARCH (2016)
Protein cofactor competition regulates the action of a multifunctional RNA helicase in different pathways
Annika U. Heininger et al.
RNA BIOLOGY (2016)
Disruption of ribosome assembly in yeast blocks cotranscriptional pre-rRNA processing and affects the global hierarchy of ribosome biogenesis
Jason Talkish et al.
RNA (2016)
Sequential domain assembly of ribosomal protein S3 drives 40S subunit maturation
Valentin Mitterer et al.
NATURE COMMUNICATIONS (2016)
UtpA and UtpB chaperone nascent pre-ribosomal RNA and U3 snoRNA to initiate eukaryotic ribosome assembly
Mirjam Hunziker et al.
NATURE COMMUNICATIONS (2016)
Ribosome-stalk biogenesis is coupled with recruitment of nuclear-export factor to the nascent 60S subunit
Anshuk Sarkar et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
The DEAD-box Protein Rok1 Orchestrates 40S and 60S Ribosome Assembly by Promoting the Release of Rrp5 from Pre-40S Ribosomes to Allow for 60S Maturation
Sohail Khoshnevis et al.
PLOS BIOLOGY (2016)
Structural and functional analysis of the RNA helicase Prp43 from the thermophilic eukaryote Chaetomium thermophilum
Marcel J. Tauchert et al.
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2016)
Functions of Ribosomal Proteins in Assembly of Eukaryotic Ribosomes In Vivo
Jesus de la Cruz et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 84 (2015)
The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins
Matthias Thoms et al.
CELL (2015)
DEAD-box helicase DDX27 regulates 3′ end formation of ribosomal 47S RNA and stably associates with the PeBoW-complex
Markus Kellner et al.
EXPERIMENTAL CELL RESEARCH (2015)
The conformational plasticity of eukaryotic RNA-dependent ATPases
Sevim Ozgur et al.
FEBS JOURNAL (2015)
Limited Portability of G-Patch Domains in Regulators of the Prp43 RNA Helicase Required for Pre-mRNA Splicing and Ribosomal RNA Maturation in Saccharomyces cerevisiae
Daipayan Banerjee et al.
GENETICS (2015)
A Conserved Deubiquitinating Enzyme Uses Intrinsically Disordered Regions to Scaffold Multiple Protein Interaction Sites
Benjamin J. Reed et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
Coordinated Ribosomal ITS2 RNA Processing by the Las1 Complex Integrating Endonuclease, Polynucleotide Kinase, and Exonuclease Activities
Lisa Gasse et al.
MOLECULAR CELL (2015)
Structure of the RNA Helicase MLE Reveals the Molecular Mechanisms for Uridine Specificity and RNA-ATP Coupling
J. Rajan Prabu et al.
MOLECULAR CELL (2015)
RNA degradation paths in a 12-subunit nuclear exosome complex
Debora Lika Makino et al.
NATURE (2015)
Mechanism of eIF6 release from the nascent 60S ribosomal subunit
Felix Weis et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis
Malik Chaker-Margot et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
hUTP24 is essential for processing of the human rRNA precursor at site A1, but not at site A0
Rafal Tomecki et al.
RNA BIOLOGY (2015)
Mechanism of eIF6 release from the nascent 60S ribosomal subunit
Felix Weis et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis
Malik Chaker-Margot et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot
Richa Sardana et al.
PLOS BIOLOGY (2015)
Regulation of DEAH/RHA Helicases by G-Patch Proteins
Julien Robert-Paganin et al.
BIOMED RESEARCH INTERNATIONAL (2015)
A non-canonical mechanism for Crm1-export cargo complex assembly
Ute Fischer et al.
ELIFE (2015)
DEAD-Box RNA Helicase Dbp4 Is Required for Small-Subunit Processome Formation and Function
Sahar Soltanieh et al.
MOLECULAR AND CELLULAR BIOLOGY (2015)
RNA Helicase Proteins as Chaperones and Remodelers
Inga Jarmoskaite et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)
A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains
Michael Gamalinda et al.
GENES & DEVELOPMENT (2014)
Physical and Functional Interaction between the Methyltransferase Bud23 and the Essential DEAH-Box RNA Helicase Ecm16
Richa Sardana et al.
MOLECULAR AND CELLULAR BIOLOGY (2014)
Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export
Yoshitaka Matsuo et al.
NATURE (2014)
Protein-guided RNA dynamics during early ribosome assembly
Hajin Kim et al.
NATURE (2014)
Nucleolar proteins Bfr2 and Enp2 interact with DEAD-box RNA helicase Dbp4 in two different complexes
Sahar Soltanieh et al.
NUCLEIC ACIDS RESEARCH (2014)
Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits
Tomasz W. Turowski et al.
NUCLEIC ACIDS RESEARCH (2014)
The telomerase inhibitor Gno1p/PINX1 activates the helicase Prp43p during ribosome biogenesis
Yan-Ling Chen et al.
NUCLEIC ACIDS RESEARCH (2014)
Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes
Sebastien Ferreira-Cerca et al.
NUCLEIC ACIDS RESEARCH (2014)
Secondary Structures of rRNAs from All Three Domains of Life
Anton S. Petrov et al.
PLOS ONE (2014)
A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase
Roman Martin et al.
RNA (2014)
60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle
Christoph Leidig et al.
NATURE COMMUNICATIONS (2014)
Rrp12 and the Exportin Crm1 Participate in Late Assembly Events in the Nucleolus during 40S Ribosomal Subunit Biogenesis
Giulia Moriggi et al.
PLOS GENETICS (2014)
Final Pre-40S Maturation Depends on the Functional Integrity of the 60S Subunit Ribosomal Protein L3
Juan J. Garcia-Gomez et al.
PLOS GENETICS (2014)
Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae
John L. Woolford et al.
GENETICS (2013)
Rrp5 Binding at Multiple Sites Coordinates Pre-rRNA Processing and Assembly
Simon Lebaron et al.
MOLECULAR CELL (2013)
In Vivo X-Ray Footprinting of Pre-30S Ribosomes Reveals Chaperone-Dependent Remodeling of Late Assembly Intermediates
Sarah F. Clatterbuck Soper et al.
MOLECULAR CELL (2013)
Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex
Debora Lika Makino et al.
NATURE (2013)
Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing
Michael Gamalinda et al.
NUCLEIC ACIDS RESEARCH (2013)
Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S-cerevisiae
Thomas Hierlmeier et al.
NUCLEIC ACIDS RESEARCH (2013)
Yeast Nop2 and Rcm1 methylate C2870 and C2278 of the 25S rRNA, respectively
Sunny Sharma et al.
NUCLEIC ACIDS RESEARCH (2013)
Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits
Jill A. Dembowski et al.
NUCLEIC ACIDS RESEARCH (2013)
Studies on the Assembly Characteristics of Large Subunit Ribosomal Proteins in S. cerevisae
Uli Ohmayer et al.
PLOS ONE (2013)
Mak5 and Ebp2 Act Together on Early Pre-60S Particles and Their Reduced Functionality Bypasses the Requirement for the Essential Pre-60S Factor Nsa1
Dagmar Pratte et al.
PLOS ONE (2013)
Cofactor-dependent specificity of a DEAD-box protein
Crystal L. Young et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Duplex Destabilization by Four Ribosomal DEAD-Box Proteins
Ivelitza Garcia et al.
BIOCHEMISTRY (2012)
A Translation-Like Cycle Is a Quality Control Checkpoint for Maturing 40S Ribosome Subunits
Bethany S. Strunk et al.
CELL (2012)
Superfamily 2 helicases
Alicia K. Byrd et al.
FRONTIERS IN BIOSCIENCE-LANDMARK (2012)
The DEAD-box RNA Helicase Dbp2 Connects RNA Quality Control with Repression of Aberrant Transcription
Sara C. Cloutier et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Rlp24 activates the AAA-ATPase Drg1 to initiate cytoplasmic pre-60S maturation
Lisa Kappel et al.
JOURNAL OF CELL BIOLOGY (2012)
Integrity of the P-site is probed during maturation of the 60S ribosomal subunit
Cyril Bussiere et al.
JOURNAL OF CELL BIOLOGY (2012)
Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p
Anna L. Mallam et al.
NATURE (2012)
Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits
Simon Lebaron et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
ATPase-dependent role of the atypical kinase Rio2 on the evolving pre-40S ribosomal subunit
Sebastien Ferreira-Cerca et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae
Jason Talkish et al.
NUCLEIC ACIDS RESEARCH (2012)
RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex
Huijue Jia et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The crystal structure of S. cerevisiae Ski2, a DExH helicase associated with the cytoplasmic functions of the exosome
Felix Halbach et al.
RNA (2012)
Synchronizing Nuclear Import of Ribosomal Proteins with Ribosome Assembly
Dieter Kressler et al.
SCIENCE (2012)
A Conserved Deubiquitinating Enzyme Controls Cell Growth by Regulating RNA Polymerase I Stability
Lauren A. Richardson et al.
CELL REPORTS (2012)
The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA
Nicholas J. Watkins et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2012)
The RNA Helicase Mtr4p Modulates Polyadenylation in the TRAMP Complex
Huijue Jia et al.
CELL (2011)
Dynamics of the Putative RNA Helicase Spb4 during Ribosome Assembly in Saccharomyces cerevisiae
Juan Jose Garcia-Gomez et al.
MOLECULAR AND CELLULAR BIOLOGY (2011)
From unwinding to clamping - the DEAD box RNA helicase family
Patrick Linder et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)
The initial U3 snoRNA:pre-rRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing
Laura M. Dutca et al.
NUCLEIC ACIDS RESEARCH (2011)
A second base pair interaction between U3 small nucleolar RNA and the 5′-ETS region is required for early cleavage of the yeast pre-ribosomal RNA
Nathalie Marmier-Gourrier et al.
NUCLEIC ACIDS RESEARCH (2011)
Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
Grzegorz Kudla et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Solution structures of DEAD-box RNA chaperones reveal conformational changes and nucleic acid tethering by a basic tail
Anna L. Mallam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The nucleolar protein Nop19p interacts preferentially with Utp25p and Dhr2p and is essential for the production of the 40S ribosomal subunit in Saccharomyces cerevisiae
Elodie Choque et al.
RNA BIOLOGY (2011)
Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates
Bethany S. Strunk et al.
SCIENCE (2011)
RNA helicases at work: binding and rearranging
Eckhard Jankowsky
TRENDS IN BIOCHEMICAL SCIENCES (2011)
SF1 and SF2 helicases: family matters
Margaret E. Fairman-Williams et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2010)
The crystal structure of Mtr4 reveals a novel arch domain required for rRNA processing
Ryan N. Jackson et al.
EMBO JOURNAL (2010)
Prp43p contains a processive helicase structural architecture with a specific regulatory domain
Helene Walbott et al.
EMBO JOURNAL (2010)
Structural basis for the function of DEAH helicases
Yangzi He et al.
EMBO REPORTS (2010)
Structure of the RNA Binding Domain of a DEAD-Box Helicase Bound to Its Ribosomal RNA Target Reveals a Novel Mode of Recognition by an RNA Recognition Motif
John W. Hardin et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
Mammalian DEAD Box Protein Ddx51 Acts in 3′ End Maturation of 28S rRNA by Promoting the Release of U8 snoRNA
Leena Srivastava et al.
MOLECULAR AND CELLULAR BIOLOGY (2010)
Defining the Pathway of Cytoplasmic Maturation of the 60S Ribosomal Subunit
Kai-Yin Lo et al.
MOLECULAR CELL (2010)
Yeast Pre-rRNA Processing and Modification Occur Cotranscriptionally
Martin Kos et al.
MOLECULAR CELL (2010)
The AAA-ATPase Rea1 Drives Removal of Biogenesis Factors during Multiple Stages of 60S Ribosome Assembly
Jochen Bassler et al.
MOLECULAR CELL (2010)
Strong dependence between functional domains in a dual-function snoRNA infers coupling of rRNA processing and modification events
Xue-hai Liang et al.
NUCLEIC ACIDS RESEARCH (2010)
Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes
Juliane Merl et al.
NUCLEIC ACIDS RESEARCH (2010)
Ribosomal protein L35 is required for 27SB pre-rRNA processing in Saccharomyces cerevisiae
Reyes Babiano et al.
NUCLEIC ACIDS RESEARCH (2010)
Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism
Meigang Gu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance
John R. Weir et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
A Complex Assembly Landscape for the 30S Ribosomal Subunit
Michael T. Sykes et al.
Annual Review of Biophysics (2009)
The mechanism of ATP-dependent RNA unwinding by DEAD box proteins
Manuel Hilbert et al.
BIOLOGICAL CHEMISTRY (2009)
Mechanochemical Removal of Ribosome Biogenesis Factors from Nascent 60S Ribosomal Subunits
Cornelia Ulbrich et al.
CELL (2009)
The Yeast Exosome Functions as a Macromolecular Cage to Channel RNA Substrates for Degradation
Fabien Bonneau et al.
CELL (2009)
The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis
Simon Lebaron et al.
EMBO JOURNAL (2009)
The DEXD/H-box RNA Helicase DDX19 Is Regulated by an α-Helical Switch
Ruairi Collins et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
RNA Helicase Prp43 and Its Co-factor Pfa1 Promote 20 to 18 S rRNA Processing Catalyzed by the Endonuclease Nob1
Brigitte Pertschy et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Distinct cytoplasmic maturation steps of 40S ribosomal subunit precursors require hRio2
Ivo Zemp et al.
JOURNAL OF CELL BIOLOGY (2009)
A Novel Small-Subunit Processome Assembly Intermediate That Contains the U3 snoRNP, Nucleolin, RRP5, and DBP4
Amy Jane Turner et al.
MOLECULAR AND CELLULAR BIOLOGY (2009)
Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis
Markus T. Bohnsack et al.
MOLECULAR CELL (2009)
Structure of the Yeast DEAD Box Protein Mss116p Reveals Two Wedges that Crimp RNA
Mark Del Campo et al.
MOLECULAR CELL (2009)
rRNA Maturation in Yeast Cells Depleted of Large Ribosomal Subunit Proteins
Gisela Poell et al.
PLOS ONE (2009)
Comparative analysis of eukaryotic U3 snoRNA
Manja Marz et al.
RNA BIOLOGY (2009)
Differential RNA-Dependent ATPase Activities of Four rRNA Processing Yeast DEAD-Box Proteins
Ivelitza Garcia et al.
BIOCHEMISTRY (2008)
Quantitative analysis of snoRNA association with pre-ribosomes and release of snR30 by Rok1 helicase
Markus T. Bohnsack et al.
EMBO REPORTS (2008)
The AAA ATPase Rix7 powers progression of ribosome biogenesis by stripping Nsa1 from pre-60S particles
Dieter Kressler et al.
JOURNAL OF CELL BIOLOGY (2008)
Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly
Tadepalli Adilakshmi et al.
NATURE (2008)
DEAD-box proteins can completely separate an RNA duplex using a single ATP
Yingfeng Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase
Bettina Theissen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding
Fei Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Characterization of the essential activities of Saccharomyces cerevisiae Mtr4p, a 3′→5′ helicase partner of the nuclear exosome
Jade Bernstein et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
The 3D rRNA modification maps database: with interactive tools for ribosome analysis
Dorota Piekna-Przybylska et al.
NUCLEIC ACIDS RESEARCH (2008)
Analysis of the in vivo assembly pathway of eukaryotic 40S ribosomal proteins
Sebastien Ferreira-Cerca et al.
MOLECULAR CELL (2007)
DEAD-box proteins unwind duplexes by local strand separation
Quansheng Yang et al.
MOLECULAR CELL (2007)
Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes
Jingyu Zhang et al.
GENES & DEVELOPMENT (2007)
Ntr1 activates the Prp43 helicase to trigger release of lariat-intron from the spliceosome
Naoko Tanaka et al.
GENES & DEVELOPMENT (2007)
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism
Jorge Perez-Fernandez et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Redundant role of DEAD box proteins p68 (Ddx5) and p72/p82 (Ddx17) in ribosome biogenesis and cell proliferation
Carolin Jalal et al.
NUCLEIC ACIDS RESEARCH (2007)
Optimization of Ribosome Structure and Function by rRNA Base Modification
Jennifer L. Baxter-Roshek et al.
PLOS ONE (2007)
The helicase Has1p is required for snoRNA release from pre-rRNA
Xue-hai Liang et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA
Christian B. F. Andersen et al.
SCIENCE (2006)
The NUG1 GTPase reveals an N-terminal RNA-binding domain that is essential for association with 60 S pre-ribosomal particles
Jochen Bassler et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA
Fulvia Bono et al.
CELL (2006)
The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturation
Franziska Bleichert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit
Thorsten Schafer et al.
NATURE (2006)
Mutations in PRP43 that uncouple RNA-dependent NTPase activity and pre-mRNA splicing function
Naoko Tanaka et al.
BIOCHEMISTRY (2006)
Structural basis for RNA unwinding by the DEAD-box protein Drosophila vasa
T Sengoku et al.
CELL (2006)
Comprehensive mutational analysis of yeast DEXD/H box RNA helicases involved in large ribosomal subunit biogenesis
KA Bernstein et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
Comprehensive mutational analysis of yeast DEXD/H box RNA helicases required for small ribosomal subunit synthesis
S Granneman et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
The splicing factor Prp43p, a DEAH box ATPase, functions in ribosome biogenesis
NB Leeds et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
Prp43p is a DEAH-box spliceosome disassembly factor essential for ribosome biogenesis
DJ Combs et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
Post-transcriptional nucleotide modification and alternative folding of RNA
M Helm
NUCLEIC ACIDS RESEARCH (2006)
The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis
Sander Granneman et al.
NUCLEIC ACIDS RESEARCH (2006)
The splicing ATPase Prp43p is a component of multiple preribosomal particles
S Lebaron et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
The putative RNA helicase Dbp4p is required for release of the U14 snoRNA from preribosomes in Saccharomyces cerevisiae
M Kos et al.
MOLECULAR CELL (2005)
RNA degradation by the exosome is promoted by a nuclear polyade nylation complex
J LaCava et al.
CELL (2005)
Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
F Wyers et al.
CELL (2005)
Characterization of the ATPase and unwinding activities of the yeast DEAD-box protein Has1p and the analysis of the roles of the conserved motifs
S Rocak et al.
NUCLEIC ACIDS RESEARCH (2005)
Has1p, a member of the DEAD-box family, is required for 40S ribosomal subunit biogenesis in Saccharomyces cerevisiae
B Emery et al.
MOLECULAR MICROBIOLOGY (2004)
U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production
V Atzorn et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae
YN Osheim et al.
MOLECULAR CELL (2004)
Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage
B Lapeyre et al.
MOLECULAR CELL (2004)
Npa1p, a component of very early pre-60S ribosomal particles, associates with a subset of small nucleolar RNPs required for peptidyl transferase center modification
C Dez et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
U3 snoRNP and Rrp5p associate independently with Saccharomyces cerevisiae 35S pre-rRNA, but Rrp5p is essential for association of Rok1p
HR Vos et al.
NUCLEIC ACIDS RESEARCH (2004)
Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme
FV Karginov et al.
NUCLEIC ACIDS RESEARCH (2004)
Imp3p and Imp4p mediate formation of essential U3-precursor rRNA (pre-rRNA) duplexes, possibly to recruit the small subunit processome to the pre-rRNA
T Gérczei et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Dbp9p, a member of the DEAD box protein family, exhibits DNA helicase activity
T Kikuma et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Sequential protein association with nascent 60S ribosomal particles
C Saveanu et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes
T Schäfer et al.
EMBO JOURNAL (2003)
Nob1p is required for cleavage of the 3′ end of 18S rRNA
A Fatica et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Mak5p, which is required for the maintenance of the M1 dsRNA virus, is encoded by the yeast ORF YBR142w and is involved in the biogenesis of the 60S subunit of the ribosome
M Zagulski et al.
MOLECULAR GENETICS AND GENOMICS (2003)
60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm
TA Nissan et al.
EMBO JOURNAL (2002)
The yeast homolog of human PinX1 is involved in rRNA and small nucleolar RNA maturation, not in telomere elongation inhibition
B Guglielmi et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
P Grandi et al.
MOLECULAR CELL (2002)
A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis
F Dragon et al.
NATURE (2002)
Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast
CA Côte et al.
RNA (2002)
Prp43 is an essential RNA-dependent ATPase required for release of lariat-intron from the spliceosome
A Martin et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Saccharomyces cerevisiae nucleolar protein Nop7p is necessary for biogenesis of 60S ribosomal subunits
CC Adams et al.
RNA (2002)
Absence of Dbp2p alters both nonsense-mediated mRNA decay and rRNA processing
AT Bond et al.
MOLECULAR AND CELLULAR BIOLOGY (2001)
Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA
CM Diges et al.
EMBO JOURNAL (2001)
Dbp9p, a putative ATP-dependent RNA helicase involved in 60S-ribosomal-subunit biogenesis, functionally interacts with Dbp6p
MC Daugeron et al.
RNA (2001)
Characterization and mutational analysis of yeast Dbp8p, a putative RNA helicase involved in ribosome biogenesis
ML Daugeron et al.
NUCLEIC ACIDS RESEARCH (2001)
Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase
JM Caruthers et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP
NJ Watkins et al.
CELL (2000)
Dhr1p, a putative DEAH-Box RNA helicase, is associated with the box C+D snoRNP U3
A Colley et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae, is required for ribosome biogenesis
F Burger et al.
NUCLEIC ACIDS RESEARCH (2000)
Degradation of ribosomal RNA precursors by the exosome
Christine Allmang et al.
NUCLEIC ACIDS RESEARCH (2000)
A hierarchy of RNA subdomains in assembly of the central domain of the 30 S ribosomal subunit
SC Agalarov et al.
RNA (2000)
分享论文
