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Christopher M. Ward et al.
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Kai Tang et al.
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Easy-to-Use InDel Markers for Genetic Mapping between Col-0 and Ler-0 Accessions of Arabidopsis thaliana
Takahiro Tanaka et al.
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Johanna Stock et al.
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Isaac A. Babarinde et al.
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Characterization of synthetic ecdysteroid analogues as functional mimics of brassinosteroids in plant growth
Jutiporn Thussagunpanit et al.
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Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study
Harold Durufle et al.
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The plant cell-wall enzyme AtXTH3 catalyses covalent cross-linking between cellulose and cello-oligosaccharide
Naoki Shinohara et al.
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Comparative transcriptomics of a complex of four European pine species
Witold Wachowiak et al.
BMC GENOMICS (2015)
Arabidopsis thaliana RALF1 opposes brassinosteroid effects on root cell elongation and lateral root formation
Tabata Bergonci et al.
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Differential Transcriptomic Analysis by RNA-Seq of GSNO-Responsive Genes Between Arabidopsis Roots and Leaves
Juan C. Begara-Morales et al.
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The Protein Phosphatase RCF2 and Its Interacting Partner NAC019 Are Critical for Heat Stress-Responsive Gene Regulation and Thermotolerance in Arabidopsis
Qingmei Guan et al.
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A mechanistic model of COR15 protein function in plant freezing tolerance: integration of structural and functional characteristics
Anja Thalhammer et al.
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Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
Jochen B. W. Wolf
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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
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Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening
Song Luhua et al.
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Tissue-Specific Profiling Reveals Transcriptome Alterations in Arabidopsis Mutants Lacking Morphological Phenotypes
Marissa Simon et al.
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Strength comparison between cold-inducible promoters of Arabidopsis cor15a and cor15b genes in potato and tobacco
Meng Li et al.
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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Proteomic analysis of differentially expressed proteins in the roots of Columbia-0 and Landsberg erecta ecotypes of Arabidopsis thaliana in response to aluminum-toxicity
T. Karuppanapandian et al.
CANADIAN JOURNAL OF PLANT SCIENCE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution
Rebecca M. Davidson et al.
PLANT JOURNAL (2012)
NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
Ravi K. Patel et al.
PLOS ONE (2012)
Photosystem II Function and Dynamics in Three Widely Used Arabidopsis thaliana Accessions
Lan Yin et al.
PLOS ONE (2012)
Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)
Ruth Grene et al.
FRONTIERS IN PLANT SCIENCE (2012)
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
Xiangchao Gan et al.
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RNA sequencing: advances, challenges and opportunities
Fatih Ozsolak et al.
NATURE REVIEWS GENETICS (2011)
The Sequence Read Archive
Rasko Leinonen et al.
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A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana
Xiaofei Yu et al.
PLANT JOURNAL (2011)
A mutation in the cytosolic O-acetylserine (thiol) lyase induces a genome-dependent early leaf death phenotype in Arabidopsis
Reza Shirzadian-Khorramabad et al.
BMC PLANT BIOLOGY (2010)
agriGO: a GO analysis toolkit for the agricultural community
Zhou Du et al.
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Disruption of Arabidopsis CHY1 Reveals an Important Role of Metabolic Status in Plant Cold Stress Signaling
Chun-Hai Dong et al.
MOLECULAR PLANT (2009)
KEGG for linking genomes to life and the environment
Minoru Kanehisa et al.
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Morphological and physiological traits of three major Arabidopsis thaliana accessions
Filippo Passardi et al.
JOURNAL OF PLANT PHYSIOLOGY (2007)
KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya et al.
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Gene duplication, exon gain and neofunctionalization of OEP16-related genes in land plants
Sinead C. Drea et al.
PLANT JOURNAL (2006)
Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy
V Lefebvre et al.
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Identification of quantitative trait loci that regulate Arabidopsis root system size and plasticity
JNF Gerald et al.
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Drought-adaptive mechanisms involved in the escape/tolerance strategies of Arabidopsis Landsberg erecta and Columbia ecotypes and their F1 reciprocal progeny
D Meyre et al.
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Flower stalk segments of Arabidopsis thaliana ecotype Columbia lack the capacity to grow in response to exogenously applied auxin
K Soga et al.
PLANT AND CELL PHYSIOLOGY (2000)
Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics
C Alonso-Blanco et al.
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