期刊
PLANT CELL TISSUE AND ORGAN CULTURE
卷 151, 期 2, 页码 451-456出版社
SPRINGER
DOI: 10.1007/s11240-022-02358-6
关键词
Alfalfa; CRISPR; Cas9; NGS; Multiple alleles
资金
- grant PICT 2017 [0484]
- grant PICT-STARTUP [2020-00004]
- Biotechnology Program of INTA, Argentina [PE I115, PE I116]
- CONICET
- IUBMB
This study demonstrates that next-generation sequencing can significantly reduce the time required for the identification of edited alleles in polyploid crops with complex genetics such as alfalfa. Through the analysis of fifteen edited events containing different doses of edited alleles, it was found that the use of NGS technology greatly improves the efficiency of determining the genotype of individual plants, which is attributed to the high output of sequences produced by this alternative genotyping approach.
Key message We showed that next-generation sequencing can be used to drastically reduce the time of the identification of edited alleles in polyploid crops with complex genetics such as alfalfa. The identification of full knockout plants is frequently the rate-limiting step of the research and commercial projects searching the complete loss of the function of target genes via the CRISPR/Cas9 system. This problem is particularly acute in polyploid crops such as alfalfa, where the common screening needs cloning and Sanger sequencing. Here, we produced and analyzed fifteen edited events containing different doses of edited alleles for three unrelated target genes. This analysis showed that next-generation sequencing (NGS) technology largely increases the efficiency of the determination of the exact genotype of an individual plant and that this increased performance is related to the high output of sequences produced by this alternative genotyping approach rather than to a higher balanced amplification of the alleles. Finally, we discuss the possible applications of NGS technology in other polyploid crops with complex genetics.
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据