4.6 Article

The DNA methylation landscape of the root-knot nematode-induced pseudo-organ, the gall, in Arabidopsis, is dynamic, contrasting over time, and critically important for successful parasitism

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Plant Sciences

Epigenetic Mechanisms in Nematode-Plant Interactions

Tarek Hewezi

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 58 (2020)

Review Plant Sciences

RNA-directed DNA Methylation and sexual reproduction: expanding beyond the seed

Hiu Tung Chow et al.

CURRENT OPINION IN PLANT BIOLOGY (2020)

Article Plant Sciences

Genome-wide DNA hypomethylation shapes nematode pattern-triggered immunity in plants

Mohammad Reza Atighi et al.

NEW PHYTOLOGIST (2020)

Review Oncology

Promoter DNA Hypermethylation and Paradoxical Gene Activation

Jim Smith et al.

TRENDS IN CANCER (2020)

Article Biochemistry & Molecular Biology

Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean

Lexiang Ji et al.

PLANT CELL (2019)

Review Plant Sciences

MicroRNAs, New Players in the Plant-Nematode Interaction

Stephanie Jaubert-Possamai et al.

FRONTIERS IN PLANT SCIENCE (2019)

Review Biochemistry & Molecular Biology

Epigenetic Regulation of Auxin Homeostasis

Eduardo Mateo-Bonmati et al.

BIOMOLECULES (2019)

Article Biochemistry & Molecular Biology

A Phenotyping Method of Giant Cells from Root-Knot Nematode Feeding Sites by Confocal Microscopy Highlights a Role for CHITINASE-LIKE 1 in Arabidopsis

Javier Cabrera et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Plant Sciences

Silenced retrotransposons are major rasiRNAs targets in Arabidopsis galls induced by Meloidogyne javanica

Virginia Ruiz-Ferrer et al.

MOLECULAR PLANT PATHOLOGY (2018)

Review Cell Biology

Dynamics and function of DNA methylation in plants

Huiming Zhang et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)

Article Plant Sciences

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

Chia-Yi Cheng et al.

PLANT JOURNAL (2017)

Article Plant Sciences

Cyst Nematode Parasitism Induces Dynamic Changes in the Root Epigenome

Tarek Hewezi et al.

PLANT PHYSIOLOGY (2017)

Article Plant Sciences

Application of Nuclear Volume Measurements to Comprehend the Cell Cycle in Root-Knot Nematode-Induced Giant Cells

Jose Dijair Antonino de Souza Junior et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Biotechnology & Applied Microbiology

DNA methylation dynamics during early plant life

Daniel Bouyer et al.

GENOME BIOLOGY (2017)

Review Plant Sciences

Genetic and epigenetic variation of transposable elements in Arabidopsis

Charles J. Underwood et al.

CURRENT OPINION IN PLANT BIOLOGY (2017)

Review Plant Sciences

DNA Methylation and Demethylation in Plant Immunity

A. Deleris et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 54 (2016)

Article Plant Sciences

Redirection of auxin flow in Arabidopsis thaliana roots after infection by root-knot nematodes

Tina Kyndt et al.

JOURNAL OF EXPERIMENTAL BOTANY (2016)

Article Plant Sciences

Histone deacetylation-mediated cellular dedifferentiation in Arabidopsis

Kyounghee Lee et al.

JOURNAL OF PLANT PHYSIOLOGY (2016)

Article Biochemistry & Molecular Biology

A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis

Ruiqiang Ye et al.

MOLECULAR CELL (2016)

Article Plant Sciences

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

Ana Lopez Sanchez et al.

PLANT JOURNAL (2016)

Article Plant Sciences

Long-Term In Vitro System for Maintenance and Amplification of Root-Knot Nematodes in Cucumis sativus Roots

Fernando E. Diaz-Manzano et al.

FRONTIERS IN PLANT SCIENCE (2016)

Article Plant Sciences

Unique cell-type-specific patterns of DNA methylation in the root meristem

Taiji Kawakatsu et al.

NATURE PLANTS (2016)

Review Plant Sciences

Non-canonical RNA-directed DNA methylation

Diego Cuerda-Gil et al.

NATURE PLANTS (2016)

Review Plant Sciences

RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants

Marjori A. Matzke et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66 (2015)

Review Cell Biology

DNA methylation pathways and their crosstalk with histone methylation

Jiamu Du et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)

Article Plant Sciences

DNA Methylation within Transcribed Regions

Taiko K. To et al.

PLANT PHYSIOLOGY (2015)

Review Plant Sciences

Structure and Function of Centromeric and Pericentromeric Heterochromatin in Arabidopsis thaliana

Lauriane Simon et al.

FRONTIERS IN PLANT SCIENCE (2015)

Article Biochemistry & Molecular Biology

ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation

Andrea D. McCue et al.

EMBO JOURNAL (2015)

Proceedings Paper Agronomy

Nematodes: A Threat to Sustainability of Agriculture

Satyandra Singh et al.

AGRICULTURE AND CLIMATE CHANGE - ADAPTING CROPS TO INCREASED UNCERTAINTY (AGRI 2015) (2015)

Review Genetics & Heredity

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

Marjori A. Matzke et al.

NATURE REVIEWS GENETICS (2014)

Article Cell Biology

Epigenetic Regulation in Plants

Craig S. Pikaard et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Review Biochemistry & Molecular Biology

Nematode-Induced Endoreduplication in Plant Host Cells: Why and How?

Janice de Almeida Engler et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2013)

Article Multidisciplinary Sciences

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

Agnes Yu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Plant Sciences

Phloem development in nematode-induced feeding sites: the implications of auxin and cytokinin

Birgit Absmanner et al.

FRONTIERS IN PLANT SCIENCE (2013)

Article Biochemical Research Methods

Fiji: an open-source platform for biological-image analysis

Johannes Schindelin et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Widespread dynamic DNA methylation in response to biotic stress

Robert H. Dowen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biotechnology & Applied Microbiology

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

Altuna Akalin et al.

GENOME BIOLOGY (2012)

Review Biochemistry & Molecular Biology

Epigenetic interplay of histone modifications and DNA methylation mediated by HDA6

Xuncheng Liu et al.

PLANT SIGNALING & BEHAVIOR (2012)

Article Cell Biology

Progressive Activation of CyclinB1-Cdk1 Coordinates Entry to Mitosis

Olivier Gavet et al.

DEVELOPMENTAL CELL (2010)

Review Multidisciplinary Sciences

Epigenetic Reprogramming in Plant and Animal Development

Suhua Feng et al.

SCIENCE (2010)

Review Plant Sciences

Roles of Plant Small RNAs in Biotic Stress Responses

Virginia Ruiz-Ferrer et al.

ANNUAL REVIEW OF PLANT BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks

Ana Pilar Ortega-Galisteo et al.

PLANT MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing

Xianwu Zheng et al.

EMBO JOURNAL (2007)

Article Biochemistry & Molecular Biology

The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis

Jianhua Zhu et al.

CURRENT BIOLOGY (2007)

Review Genetics & Heredity

Transposable elements and the epigenetic regulation of the genome

R. Keith Slotkin et al.

NATURE REVIEWS GENETICS (2007)

Article Biochemistry & Molecular Biology

Cell cycle-regulated gene expression in Arabidopsis

M Menges et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)