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Evan Bolyen et al.
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Alexander T. Dilthey et al.
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Nanopore native RNA sequencing of a human poly(A) transcriptome
Rachael E. Workman et al.
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Derrick E. Wood et al.
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DeepSimulator: a deep simulator for Nanopore sequencing
Yu Li et al.
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Alfonso Benitez-Paez et al.
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Adaptive seeds tame genomic sequence comparison
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Vaginal microbiome of reproductive-age women
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