☆ 4.8 Review

Chemical fuels for molecular machinery

NATURE CHEMISTRY (2022)

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Article Multidisciplinary Sciences

Autonomous fuelled directional rotation about a covalent single bond

Stefan Borsley et al.

Summary: In this study, a catalysis-driven molecular motor capable of continuous 360 degrees directional rotation powered by chemical fuel was demonstrated. The directionality of the motor is influenced by the chirality of the catalyst and fuel, and can be easily reversed.

NATURE (2022)

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Article Chemistry, Multidisciplinary

Insights from an information thermodynamics analysis of a synthetic molecular motor

Shuntaro Amano et al.

Summary: The framework of information thermodynamics allows us to quantitatively relate information to other thermodynamic parameters and reveals the generation of energy and information flow in the chemical to mechanical process. This is of great significance for understanding the thermodynamic level of molecular motors and has practical implications for machine design.

NATURE CHEMISTRY (2022)

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Article Multidisciplinary Sciences

Simulating a chemically fueled molecular motor with nonequilibrium molecular dynamics

Alex Albaugh et al.

Summary: The authors simulated the movement of molecular motors under non-equilibrium conditions and developed a dynamic scheme to observe their cycles. By coarse graining the simulations, they identified inter-particle interactions that regulate the motor rates.

NATURE COMMUNICATIONS (2022)

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Review Chemistry, Multidisciplinary

The Transient Covalent Bond in Abiotic Nonequilibrium Systems

Lasith S. Kariyawasam et al.

Summary: Biochemical systems use the energy of chemical fuels to operate out-of-equilibrium and perform critical functions. The formation of transient covalent bonds is a key tool in designing analogous reaction networks. Recent demonstrations of abiotic nonequilibrium systems using fuel chemistries have shown how different fuel reactions can impact a wide range of nonequilibrium behaviors, from self-assembly to the operation of molecular machines.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

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Article Chemistry, Multidisciplinary

Boric Acid-Fueled ATP Synthesis by FoF1 ATP Synthase Reconstituted in a Supramolecular Architecture

Xia Xu et al.

Summary: By using boric acid as fuel and choosing polyols to release locked protons, controlled proton gradients are established across the lipid membrane to drive ATP synthesis, enabling tunable ATP production.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

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Review Chemistry, Multidisciplinary

Dissipative Self-Assembly: Fueling with Chemicals versus Light

Maren Weissenfels et al.

Summary: Dissipative self-assembly is common in nature, involving complex structures and functions fueled by energy stored in chemical fuels like ATP. Synthetic chemically and light-driven systems have been developed to mimic natural systems, with multiple analogies between these modes of dissipative self-assembly. Further development in this field is anticipated.

CHEM (2021)

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Review Chemistry, Multidisciplinary

Engineering of stimuli-responsive lipid-bilayer membranes using supramolecular systems

Matthew J. Langton

Summary: This review discusses the development of stimuli-responsive supramolecular systems for controlling ion transport, signal transduction, and catalysis in lipid bilayer membrane systems. Recent progress in achieving spatio-temporal control over activity in artificial and living cells is highlighted in the article. Challenges, scope, limitations, and future potential for using supramolecular systems to engineer stimuli-responsive lipid bilayer membranes are also discussed.

NATURE REVIEWS CHEMISTRY (2021)

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Review Chemistry, Multidisciplinary

Chemically Fueled Self-Assembly in Biology and Chemistry

Krishnendu Das et al.

Summary: Life is a non-equilibrium state of matter sustained by energy expenditure, mostly utilizing chemical energy stored in molecules. Understanding the transfer of chemical energy to biochemical processes is crucial for developing artificial systems with life-like processes. Strategies for controlling the structural organization of organic molecules have been identified based on distinguishable physical-organic foundations, with examples from biology and chemistry illustrating their practical implementation and unique opportunities.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

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Article Nanoscience & Nanotechnology

Chemical engines: driving systems away from equilibrium through catalyst reaction cycles

Shuntaro Amano et al.

Summary: This article discusses the complex functions exhibited by biological and chemical systems under non-equilibrium conditions, as well as the mechanisms of energy extraction and utilization through chemical engines. By linking different examples using a common conceptual framework, it explores future challenges and potential applications. The focus of the research is on how to utilize these mechanisms to operate chemical engines.

NATURE NANOTECHNOLOGY (2021)

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Article Chemistry, Multidisciplinary

A Doubly Kinetically-Gated Information Ratchet Autonomously Driven by Carbodiimide Hydration

Stefan Borsley et al.

Summary: The study introduces a novel rotaxane-based information ratchet powered by a carbodiimide fuel, driving the macrocycle distribution away from equilibrium. The reaction harnesses energy through kinetic differentiation of mechanical states and achieve directional motion of the macrocycle driven by catalysis.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

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Article Multidisciplinary Sciences

A catalysis-driven artificial molecular pump

Shuntaro Amano et al.

Summary: This study introduces an autonomous chemically fueled information ratchet that continuously pumps crown ether macrocycles from bulk solution onto a molecular axle without the need for further intervention. By tuning the dynamics of the processes, the molecular machine is able to move macrocycles from their lowest energy state in the solution to a higher energy state on the axle, maintaining out-of-equilibrium [n]rotaxanes as long as unreacted fuel is present.

NATURE (2021)

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Review Chemistry, Multidisciplinary

Theory of Nonequilibrium Free Energy Transduction by Molecular Machines

Aidan I. Brown et al.

CHEMICAL REVIEWS (2020)

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Review Chemistry, Multidisciplinary

Photo- and Redox-Driven Artificial Molecular Motors

Massimo Baroncini et al.

CHEMICAL REVIEWS (2020)

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Review Chemistry, Multidisciplinary

Abiotic Chemical Fuels for the Operation of Molecular Machines

Chiara Biagini et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2020)

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Review Chemistry, Multidisciplinary

The Design of Dissipative Molecular Assemblies Driven by Chemical Reaction Cycles

Benedikt Riess et al.

CHEM (2020)

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Review Chemistry, Multidisciplinary

Devising Synthetic Reaction Cycles for Dissipative Nonequilibrium Self-Assembly

Nishant Singh et al.

ADVANCED MATERIALS (2020)

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The Future of Molecular Machines

Ivan Aprahamian

ACS CENTRAL SCIENCE (2020)

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Review Chemistry, Multidisciplinary

Chemical-Fuel-Driven Assembly in Macromolecular Science: Recent Advances and Challenges

ZeJian Leng et al.

CHEMPLUSCHEM (2020)

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Review Chemistry, Physical

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Julian Valero et al.

CHEMPHYSCHEM (2020)

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Article Chemistry, Multidisciplinary

Molecular assemblers: molecular machines performing chemical synthesis

Rainer Herges

CHEMICAL SCIENCE (2020)

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Article Chemistry, Multidisciplinary

Dissipative Catalysis with a Molecular Machine

Chiara Biagini et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)

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Article Biology

Structure of a bacterial ATP synthase

Hui Guo et al.

ELIFE (2019)

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Article Chemistry, Multidisciplinary

Fatty Acid Fueled Transmembrane Chloride Transport

Ethan N. W. Howe et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)

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Article Biochemistry & Molecular Biology

Structure of the dynein-2 complex and its assembly with intraflagellar transport trains

Katerina Toropova et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)

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Article Multidisciplinary Sciences

Kinetic asymmetry allows macromolecular catalysts to drive an information ratchet

R. Dean Astumian

NATURE COMMUNICATIONS (2019)

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Thermodynamic efficiency in dissipative chemistry

Emanuele Penocchio et al.

NATURE COMMUNICATIONS (2019)

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Article Chemistry, Multidisciplinary

Step-by-step reaction-powered mechanical motion triggered by a chemical fuel pulse

Qiang Shi et al.

CHEMICAL SCIENCE (2019)

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Article Chemistry, Multidisciplinary

Dissipative Self-Assembly Driven by the Consumption of Chemical Fuels

Soumen De et al.

ADVANCED MATERIALS (2018)

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Controlling Dual Molecular Pumps Electrochemically

Cristian Pezzato et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2018)

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Article Multidisciplinary Sciences

Molecular rotary motors: Unidirectional motion around double bonds

Diederik Roke et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

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Article Multidisciplinary Sciences

Molecular machines with bio-inspired mechanisms

Liang Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

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Article Nanoscience & Nanotechnology

Energy consumption in chemical fuel-driven self-assembly

Giulio Ragazzon et al.

NATURE NANOTECHNOLOGY (2018)

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Review Chemistry, Multidisciplinary

Eight Kinetically Stable but Thermodynamically Activated Molecules that Power Cell Metabolism

Christopher T. Walsh et al.

CHEMICAL REVIEWS (2018)

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Article Chemistry, Multidisciplinary

Transient Helicity: Fuel-Driven Temporal Control over Conformational Switching in a Supramolecular Polymer

Shikha Dhiman et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2017)

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Article Chemistry, Multidisciplinary

Adenosine-Phosphate-Fueled, Temporally Programmed Supramolecular Polymers with Multiple Transient States

Shikha Dhiman et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2017)

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Article Chemistry, Multidisciplinary

Dissipative Assembly of Aqueous Carboxylic Acid Anhydrides Fueled by Carbodiimides

Lasith S. Kariyawasam et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2017)

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Rotary and linear molecular motors driven by pulses of a chemical fuel

Sundus Erbas-Cakmak et al.

SCIENCE (2017)

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Non-equilibrium dissipative supramolecular materials with a tunable lifetime

Marta Tena-Solsona et al.

NATURE COMMUNICATIONS (2017)

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Non-equilibrium steady states in supramolecular polymerization

Alessandro Sorrenti et al.

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Remi Merindol et al.

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ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)

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Coupling of the Decarboxylation of 2-Cyano-2-phenylpropanoic Acid to Large-Amplitude Motions: A Convenient Fuel for an Acid-Base-Operated Molecular Switch

Jose Augusto Berrocal et al.

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Metabolic pathway compartmentalization: an underappreciated opportunity?

Annalisa Zecchin et al.

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Jing Pan et al.

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Helgo Schmidt et al.

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Nucleoside diphosphate kinases fuel dynamin superfamily proteins with GTP for membrane remodeling

Mathieu Boissan et al.

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A Three-Compartment Chemically-Driven Molecular Information Ratchet

Armando Carlone et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

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Review Biochemistry & Molecular Biology

Natural strategies for the spatial optimization of metabolism in synthetic biology

Christina M. Agapakis et al.

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Autonomous movement of platinum-loaded stomatocytes

Daniela A. Wilson et al.

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Detection of Neural Activity in the Brains of Japanese Honeybee Workers during the Formation of a Hot Defensive Bee Ball

Atsushi Ugajin et al.

PLOS ONE (2012)

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ATP synthesis and storage

Massimo Bonora et al.

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A universal pathway for kinesin stepping

Bason E. Clancy et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

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Universal optimal working cycles of molecular motors

Artem Efremov et al.

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Enzyme dynamics point to stepwise conformational selection in catalysis

Buyong Ma et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2010)

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Azodicarboxamides as Template Binding Motifs for the Building of Hydrogen-Bonded Molecular Shuttles

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At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?

Shina C. L. Kamerlin et al.

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Mechanism for a Directional, Processive, and Reversible DNA Motor

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A chemically-driven molecular information ratchet

Monica Alvarez-Perez et al.

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Synthetic molecular motors and mechanical machines

Euan R. Kay et al.

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Theory and example of a small-molecule motor

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