相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm Genome
Andre Luiz de Oliveira et al.
MOLECULAR BIOLOGY AND EVOLUTION (2022)
Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis
Tjorven Hinzke et al.
ELIFE (2021)
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts
Ruoshi Zhang et al.
BIOINFORMATICS (2021)
BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements
Xiaoting Hua et al.
FRONTIERS IN MICROBIOLOGY (2021)
Shining light on a deep- sea bacterial symbiont population structure with CRISPR
Maeva Perez et al.
MICROBIAL GENOMICS (2021)
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Guillaume Gautreau et al.
PLoS Computational Biology (2020)
Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake
Yoshiki Tanaka et al.
SCIENCE ADVANCES (2020)
Extremophile deep-sea viral communities from hydrothermal vents: Structural and functional analysis
Hugo G. Castelan-Sanchez et al.
MARINE GENOMICS (2019)
Polyclonal symbiont populations in hydrothermal vent tubeworms and the environment
Julia Polzin et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2019)
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Diep Thi Hoang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
David Couvin et al.
NUCLEIC ACIDS RESEARCH (2018)
A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile
Takuro Nunoura et al.
SCIENCE (2018)
Convergent Evolution in Intracellular Elements Plasmids as Model Endosymbionts
Anne-Kathrin Dietel et al.
TRENDS IN MICROBIOLOGY (2018)
Comparative Analysis of Genomic Island Prediction Tools
Antonio Camilo da Silva Filho et al.
FRONTIERS IN GENETICS (2018)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Jaime Huerta-Cepas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
Claire Bertelli et al.
NUCLEIC ACIDS RESEARCH (2017)
An Overview of the Bacterial Carbonic Anhydrases
Claudiu T. Supuran et al.
METABOLITES (2017)
Evolution and Ecology of CRISPR
Edze R. Westra et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 47 (2016)
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
Imchang Lee et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
Heme Synthesis and Acquisition in Bacterial Pathogens
Jacob E. Choby et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
PHASTER: a better, faster version of the PHAST phage search tool
David Arndt et al.
NUCLEIC ACIDS RESEARCH (2016)
Computational methods for predicting genomic islands in microbial genomes
Bingxin Lu et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Endosymbionts escape dead hydrothermal vent tubeworms to enrich the free-living population
Julia Klose et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
Xavier Didelot et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
EXPLAINING MUTUALISM VARIATION: A NEW EVOLUTIONARY PARADOX?
Katy D. Heath et al.
EVOLUTION (2014)
Promoters of Escherichia coli versus Promoter Islands: Function and Structure Comparison
Valeriy V. Panyukov et al.
PLOS ONE (2013)
Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer
Manuel Kleiner et al.
CURRENT OPINION IN MICROBIOLOGY (2012)
The complexity of virus systems: the case of endosymbionts
Jason A. Metcalf et al.
CURRENT OPINION IN MICROBIOLOGY (2012)
Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics
Antje Gardebrecht et al.
ISME JOURNAL (2012)
High-Density Transcriptional Initiation Signals Underline Genomic Islands in Bacteria
Qianli Huang et al.
PLOS ONE (2012)
The metabolic demands of endosymbiotic chemoautotrophic metabolism on host physiological capacities
J. J. Childress et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2011)
PHAST: A Fast Phage Search Tool
You Zhou et al.
NUCLEIC ACIDS RESEARCH (2011)
New paradigms for the evolution of beneficial infections
Joel L. Sachs et al.
TRENDS IN ECOLOGY & EVOLUTION (2011)
FASconCAT: Convenient handling of data matrices
Patrick Kueck et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
Detecting genomic islands using bioinformatics approaches
Morgan G. I. Langille et al.
NATURE REVIEWS MICROBIOLOGY (2010)
A complex journey: transmission of microbial symbionts
Monika Bright et al.
NATURE REVIEWS MICROBIOLOGY (2010)
ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes
Pryavahiny Kichenaradja et al.
NUCLEIC ACIDS RESEARCH (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Interaction between Sox proteins of two physiologically distinct bacteria and a new protein involved in thiosulfate oxidation
Cornelia Welte et al.
FEBS LETTERS (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
A simple and general explanation for the evolution of altruism
Jeffrey A. Fletcher et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Increased sulfate uptake by E. coli overexpressing the SLC26-related SulP protein Rv1739c from Mycobacterium tuberculosis
Alexander S. Zolotarev et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2008)
Multiple Rubisco forms in proteobacteria:: their functional significance in relation to CO2 acquisition by the CBB cycle
Murray Ronald Badger et al.
JOURNAL OF EXPERIMENTAL BOTANY (2008)
Microbial biogeography: From taxonomy to traits
Jessica L. Green et al.
SCIENCE (2008)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya et al.
NUCLEIC ACIDS RESEARCH (2007)
Characterization of bacterial community structure in vestimentiferan tubeworm Ridgeia piscesae trophosomes
Leslie S. -L. Chao et al.
MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE (2007)
Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila
Stephanie Markert et al.
SCIENCE (2007)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
Adrian Alexa et al.
BIOINFORMATICS (2006)
Horizontal endosymbiont transmission in hydrothermal vent tubeworms
AD Nussbaumer et al.
NATURE (2006)
ISfinder: the reference centre for bacterial insertion sequences
P. Siguier et al.
NUCLEIC ACIDS RESEARCH (2006)
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
JZ Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
The microbial pan-genome
D Medini et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
The color of the trophosome:: elemental sulfur distribution in the endosymbionts of Riftia pachyptila (Vestimentifera: Siboglinidae)
B Pflugfelder et al.
MARINE BIOLOGY (2005)
The bacterial cytochrome cbb3 oxidases
RS Pitcher et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2004)
Glycogen storage in the Riftia pachyptila trophosome: contribution of host and symbionts
A Sorgo et al.
MARINE ECOLOGY PROGRESS SERIES (2002)
Lateral gene transfer and the nature of bacterial innovation
H Ochman et al.
NATURE (2000)
An autoradiographic examination of carbon fixation, transfer and utilization in the Riftia pachyptila symbiosis
M Bright et al.
MARINE BIOLOGY (2000)
分享论文
