4.7 Article

Isolated Grauer's gorilla populations differ in diet and gut microbiome

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

The gut microbiome influences host diet selection behavior

Brian K. Trevelline et al.

Summary: This study demonstrates that the gut microbiome can influence host diet selection behavior by mediating the availability of essential amino acids, revealing a mechanism by which gut microbiota can regulate host foraging behavior.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Editorial Material Ecology

The era of reference genomes in conservation genomics

Giulio Formenti et al.

Summary: Progress in genome sequencing has enabled the generation of large-scale reference genomes, representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, allowing comprehensive analyses in population and functional genomics, and are expected to revolutionize conservation genomics.

TRENDS IN ECOLOGY & EVOLUTION (2022)

Article Biochemistry & Molecular Biology

Social groups constrain the spatiotemporal dynamics of wild sifaka gut microbiomes

Amanda C. Perofsky et al.

Summary: The study found that permanent social groupings have a significant impact on the gut microbiome composition and dynamics of wild primates, with each social group maintaining unique gut microbial signatures. Individuals with unstable social ties or new immigrants exhibited faster rates of microbiome turnover across seasons.

MOLECULAR ECOLOGY (2021)

Article Biology

Effects of domestication on the gut microbiota parallel those of human industrialization

Aspen T. Reese et al.

Summary: The study found that domestication and industrialization have had similar impacts on gut microbiota, mainly through changes in diet and ecological environment. Successfully re-establishing wild-like microbiota in domesticated mice through experiments demonstrates the potential for reshaping gut microbiota in domesticated animals.
Article Biochemistry & Molecular Biology

The oral microbiota of wild bears in Sweden reflects the history of antibiotic use by humans

Jaelle C. Brealey et al.

Summary: The rise of antimicrobial resistance (AMR) since the 1940s has become a major global health threat, with wild animals being used as indicators of human-associated AMR contamination. A study on Swedish brown bears over the past 180 years showed a significant increase in AMR burden and gene diversity, but a decrease in the last two decades coinciding with Swedish mitigation strategies. This suggests that public health policies can effectively reduce human-associated AMR contamination in the environment and wildlife.

CURRENT BIOLOGY (2021)

Article Multidisciplinary Sciences

Gut microbiome heritability is nearly universal but environmentally contingent

Laura Grieneisen et al.

Summary: Analysis of 16,234 gut microbiome profiles from 585 wild baboons collected over 14 years revealed that host genetic effects on the gut microbiome are nearly universal. The study found that 97% of microbiome phenotypes were significantly heritable, with heritability being greater in the dry season, with low diet diversity, and in older hosts. These findings suggest the potential for selection on microbiome characteristics as a host phenotype.

SCIENCE (2021)

Article Zoology

Diet of Grauer's Gorillas (Gorilla beringei graueri) in a Low-Elevation Forest

Yntze van der Hoek et al.

Summary: This study provides an initial overview of the food items consumed by Grauer's gorillas in the Nkuba Conservation Area of the Democratic Republic of the Congo, showing that vegetative plant parts make up the majority of their diet with fruit consumption peaking in the wet season. The diet of Grauer's gorillas in the NCA differs from those in highland habitats, but shows similarities with gorillas in lowland forests and western lowland gorillas.

FOLIA PRIMATOLOGICA (2021)

Article Zoology

Daily Travel Distances of Unhabituated Grauer's Gorillas (Gorilla beringei graueri) in a Low Elevation Forest

Yntze Van der Hoek et al.

Summary: The movement patterns of Grauer's gorillas in lowland forests show larger daily travel distances compared to those in highland habitats, with a possible link to temporal changes in fruit availability or consumption. This observation has important implications for understanding the ecological role of Grauer's gorillas and for estimating their current and future distributions, abundances, and carrying capacities.

FOLIA PRIMATOLOGICA (2021)

Article Biochemistry & Molecular Biology

genodiveversion 3.0: Easy-to-use software for the analysis of genetic data of diploids and polyploids

Patrick G. Meirmans

MOLECULAR ECOLOGY RESOURCES (2020)

Article Biochemistry & Molecular Biology

Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome

Jaelle C. Brealey et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Review Ecology

Identifying Microbiome-Mediated Behaviour in Wild Vertebrates

Gabrielle L. Davidson et al.

TRENDS IN ECOLOGY & EVOLUTION (2020)

Article Biochemistry & Molecular Biology

Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

Bruce E. Deagle et al.

MOLECULAR ECOLOGY (2019)

Article Ecology

Comparison of Methods To Examine Diet of Feral Horses from Noninvasively Collected Fecal Samples

Sarah R. B. King et al.

RANGELAND ECOLOGY & MANAGEMENT (2019)

Review Biochemistry & Molecular Biology

Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations

Raphael Eisenhofer et al.

TRENDS IN MICROBIOLOGY (2019)

Article Biochemistry & Molecular Biology

Giant Pandas Are Macronutritional Carnivores

Yonggang Nie et al.

CURRENT BIOLOGY (2019)

Article Multidisciplinary Sciences

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

Seth M. Rudman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biodiversity Conservation

The microbiome in threatened species conservation

Annie G. West et al.

BIOLOGICAL CONSERVATION (2019)

Article Biochemical Research Methods

Updating the 97% identity threshold for 16S ribosomal RNA OTUs

Robert C. Edgar

BIOINFORMATICS (2018)

Article Multidisciplinary Sciences

Earth BioGenome Project: Sequencing life for the future of life

Harris A. Lewin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Multidisciplinary Sciences

A global atlas of the dominant bacteria found in soil

Manuel Delgado-Baquerizo et al.

SCIENCE (2018)

Article Biochemistry & Molecular Biology

POPHELPER: an R package and web app to analyse and visualize population structure

R. M. Francis

MOLECULAR ECOLOGY RESOURCES (2017)

Article Biology

Hierarchical social networks shape gut microbial composition in wild Verreaux's sifaka

Amanda C. Perofsky et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)

Article Biochemical Research Methods

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

Zachary S. L. Foster et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Review Microbiology

Evolutionary Biology Needs Wild Microbiomes

Sarah M. Hird

FRONTIERS IN MICROBIOLOGY (2017)

Article Microbiology

Microbiome Datasets Are Compositional: And This Is Not Optional

Gregory B. Gloor et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

OBITOOLS: a UNIX-inspired software package for DNA metabarcoding

Frederic Boyer et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Review Ecology

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

Antton Alberdi et al.

TRENDS IN ECOLOGY & EVOLUTION (2016)

Article Multidisciplinary Sciences

Social behavior shapes the chimpanzee pan-microbiome

Andrew H. Moeller et al.

SCIENCE ADVANCES (2016)

Article Automation & Control Systems

zCompositions - R Package for multivariate imputation of left-censored data under a compositional approach

Javier Palarea-Albaladejo et al.

CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS (2015)

Article Computer Science, Interdisciplinary Applications

Fitting Linear Mixed-Effects Models Using lme4

Douglas Bates et al.

JOURNAL OF STATISTICAL SOFTWARE (2015)

Article Biochemistry & Molecular Biology

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

Naama M. Kopelman et al.

MOLECULAR ECOLOGY RESOURCES (2015)

Article Biology

Partial uracil - DNA - glycosylase treatment for screening of ancient DNA

Nadin Rohland et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Multidisciplinary Sciences

Seasonal Shifts in Diet and Gut Microbiota of the American Bison (Bison bison)

Gaddy T. Bergmann et al.

PLOS ONE (2015)

Review Behavioral Sciences

Social behavior and the microbiome

Elizabeth A. Archie et al.

CURRENT OPINION IN BEHAVIORAL SCIENCES (2015)

Article Biochemical Research Methods

A multivariate approach to the integration of multi-omics datasets

Chen Meng et al.

BMC BIOINFORMATICS (2014)

Article Mathematics, Interdisciplinary Applications

Ward's Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward's Criterion?

Fionn Murtagh et al.

JOURNAL OF CLASSIFICATION (2014)

Article Multidisciplinary Sciences

Rapid changes in the gut microbiome during human evolution

Andrew H. Moeller et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Genetics & Heredity

An overview of STRUCTURE: applications, parameter settings, and supporting software

Liliana Porras-Hurtado et al.

Frontiers in Genetics (2013)

Article Biochemistry & Molecular Biology

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

Martin Kircher et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park

Patrick H. Degnan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemistry & Molecular Biology

Assessing population structure: F-ST and related measures

Patrick G. Meirmans et al.

MOLECULAR ECOLOGY RESOURCES (2011)

Article Biotechnology & Applied Microbiology

An In silico approach for the evaluation of DNA barcodes

Gentile Francesco Ficetola et al.

BMC GENOMICS (2010)

Review Plant Sciences

Chromoplast Differentiation: Current Status and Perspectives

Isabel Egea et al.

PLANT AND CELL PHYSIOLOGY (2010)

Review Ecology

DNA barcoding for ecologists

Alice Valentini et al.

TRENDS IN ECOLOGY & EVOLUTION (2009)

Article Biochemical Research Methods

adegenet:: a R package for the multivariate analysis of genetic markers

Thibaut Jombart

BIOINFORMATICS (2008)

Article Computer Science, Interdisciplinary Applications

compositions: A unified R package to analyze compositional data

K. Gerald van den Boogaart et al.

COMPUTERS & GEOSCIENCES (2008)

Article Biochemistry & Molecular Biology

Females Shape the Genetic Structure of a Gorilla Population

Katerina Guschanski et al.

CURRENT BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding

Pierre Taberlet et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biotechnology & Applied Microbiology

Reference based annotation with GeneMapper

Sourav Chatterji et al.

GENOME BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

G Evanno et al.

MOLECULAR ECOLOGY (2005)

Article Zoology

Western gorilla diet: A synthesis from six sites

ME Rogers et al.

AMERICAN JOURNAL OF PRIMATOLOGY (2004)

Article Biodiversity Conservation

Accurate DNA-based sex identification of apes using non-invasive samples

Brenda J. Bradley et al.

CONSERVATION GENETICS (2001)

Article Geosciences, Multidisciplinary

Logratio analysis and compositional distance

J Aitchison et al.

MATHEMATICAL GEOLOGY (2000)