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Chi Zhang et al.
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Ioanna Kalvari et al.
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Tao Ma et al.
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M. Ravinet et al.
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Feng Gao et al.
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Felipe A. Simao et al.
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High-Throughput Sequencing Technologies
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Yong-Hong Zhang et al.
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Lam-Tung Nguyen et al.
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Fast and sensitive protein alignment using DIAMOND
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Kazutaka Katoh et al.
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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton et al.
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fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
Laurent Excoffier et al.
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Guillaume Marcais et al.
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The variant call format and VCFtools
Petr Danecek et al.
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Zhi-Qiang Zhang et al.
FLORA (2011)
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Heng Li et al.
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Aaron McKenna et al.
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InterPro: the integrative protein signature database
Sarah Hunter et al.
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RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
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Alkes L. Price et al.
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CAFE: a computational tool for the study of gene family evolution
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Genomic islands of speciation in Anopheles gambiae
TL Turner et al.
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InterProScan: protein domains identifier
E Quevillon et al.
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Niche conservatism: Integrating evolution, ecology, and conservation biology
JJ Wiens et al.
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Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
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Phylogeographic relationships within the Mediterranean turbot inferred by mitochondrial DNA haplotype variation
N Suzuki et al.
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AUGUSTUS: a web server for gene finding in eukaryotes
M Stanke et al.
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TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
WH Majoros et al.
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OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
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r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
MJ Sanderson
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The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
A Bairoch et al.
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