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Dennis Pischel et al.
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David Schnoerr et al.
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How to deal with parameters for whole-cell modelling
Ann C. Babtie et al.
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Transitions in optimal adaptive strategies for populations in fluctuating environments
Andreas Mayer et al.
PHYSICAL REVIEW E (2017)
Stochastic Simulation of Biomolecular Networks in Dynamic Environments
Margaritis Voliotis et al.
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Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion
Fabian Froehlich et al.
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Fluctuations in reactive networks subject to extrinsic noise studied in the framework of the chemical Langevin equation
H. Berthoumieux
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Multivariate moment closure techniques for stochastic kinetic models
Eszter Lakatos et al.
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Adaptive hybrid simulations for multiscale stochastic reaction networks
Benjamin Hepp et al.
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Simulation of biochemical reactions with time-dependent rates by the rejection-based algorithm
Vo Hong Thanh et al.
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Cameron Sokolik et al.
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Cell-to-Cell Variability in the Propensity to Transcribe Explains Correlated Fluctuations in Gene Expression
Marc S. Sherman et al.
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The complex chemical Langevin equation
David Schnoerr et al.
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Stem cell differentiation as a many-body problem
Bin Zhang et al.
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Christoph Zechner et al.
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The Interplay of Intrinsic and Extrinsic Bounded Noises in Biomolecular Networks
Giulio Caravagna et al.
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Quantifying Intrinsic and Extrinsic Variability in Stochastic Gene Expression Models
Abhyudai Singh et al.
PLOS ONE (2013)
Optimizing threshold-schedules for sequential approximate Bayesian computation: applications to molecular systems
Daniel Silk et al.
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Combined Model of Intrinsic and Extrinsic Variability for Computational Network Design with Application to Synthetic Biology
Tina Toni et al.
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Plasticity of tumour and immune cells: a source of heterogeneity and a cause for therapy resistance?
Michael Hoelzel et al.
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Non-genetic heterogeneity from stochastic partitioning at cell division
Dann Huh et al.
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Separating intrinsic from extrinsic fluctuations in dynamic biological systems
Andreas Hilfinger et al.
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Quantifying the Waddington landscape and biological paths for development and differentiation
Jin Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Stochastic synchronization of neuronal populations with intrinsic and extrinsic noise
Paul C Bressloff et al.
Journal of Mathematical Neuroscience (2011)
Non-genetic heterogeneity of cells in development: more than just noise
Sui Huang
DEVELOPMENT (2009)
Stochasticity in single gene expression with both intrinsic noise and fluctuation in kinetic parameters
Jinzhi Lei
JOURNAL OF THEORETICAL BIOLOGY (2009)
Exploring the roles of noise in the eukaryotic cell cycle
Sandip Kar et al.
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Noisy cell growth rate leads to fluctuating protein concentration in bacteria
Saburo Tsuru et al.
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Colored extrinsic fluctuations and stochastic gene expression
Vahid Shahrezaei et al.
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Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
Hannah H. Chang et al.
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Stochastic switching as a survival strategy in fluctuating environments
Murat Acar et al.
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The functional response of upstream DNA to dynamic supercoiling in vivo
Fedor Kouzine et al.
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A modified next reaction method for simulating chemical systems with time dependent propensities and delays
David F. Anderson
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Heritable stochastic switching revealed by single-cell genealogy
Benjamin B. Kaufmann et al.
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Network motifs: theory and experimental approaches
Uri Alon
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Non-coding-RNA regulators of RNA polymerase II transcription
James A. Goodrich et al.
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Single-cell proteomic analysis of S-cerevisiae reveals the architecture of biological noise
John R. S. Newman et al.
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Origins of extrinsic variability in eukaryotic gene expression
D Volfson et al.
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Efficient step size selection for the tau-leaping simulation method
Y Cao et al.
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The finite state projection algorithm for the solution of the chemical master equation
B Munsky et al.
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Phenotypic diversity, population growth, and information in fluctuating environments
E Kussell et al.
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Gene regulation at the single-cell level
N Rosenfeld et al.
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The slow-scale stochastic simulation algorithm
Y Cao et al.
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Control of stochasticity in eukaryotic gene expression
JM Raser et al.
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The dynamic response of upstream DNA to transcription-generated torsional stress
F Kouzine et al.
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Intrinsic and extrinsic contributions to stochasticity in gene expression
PS Swain et al.
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Stochastic gene expression in a single cell
MB Elowitz et al.
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The experimental evolution of specialists, generalists, and the maintenance of diversity
R Kassen
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Approximate accelerated stochastic simulation of chemically reacting systems
DT Gillespie
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