4.7 Article

Draft Genome of Tanacetum Coccineum: Genomic Comparison of Closely Related Tanacetum-Family Plants

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions

Magnus Alm Rosenblad et al.

Summary: This study characterized the genome of the bay barnacle Balanus improvisus, revealing its haploid genome size of approximately 740 Mbp and highly fragmented assembly due to high nucleotide diversity and repeat content. These genomic features can guide the development of a high-quality reference genome for further exploration of barnacle biology and antifouling strategies.

MARINE BIOTECHNOLOGY (2021)

Letter Biochemistry & Molecular Biology

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

Mose Manni et al.

Summary: The BUSCO software provides essential methods for assessing the quality of genomic and metagenomic data, offering new functionalities and improvements to streamline the process. It is capable of evaluating both eukaryotic and prokaryotic species, and can be used across various data types including genome assemblies, metagenomic bins, transcriptomes, and gene sets.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

Article Biochemistry & Molecular Biology

CDD/SPARCLE: the conserved domain database in 2020

Shennan Lu et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemistry & Molecular Biology

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Review Plant Sciences

How Plants Synthesize Pyrethrins: Safe and Biodegradable Insecticides

Daniel B. Lybrand et al.

TRENDS IN PLANT SCIENCE (2020)

Article Biochemical Research Methods

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

Aleksey V. Zimin et al.

PLOS COMPUTATIONAL BIOLOGY (2020)

Article Multidisciplinary Sciences

Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides

Akira Shiraishi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biochemistry & Molecular Biology

ORTHOSCOPE: An Automatic Web Tool for Phylogenetically Inferring Bilaterian Orthogroups with User-Selected Taxa

Jun Inoue et al.

MOLECULAR BIOLOGY AND EVOLUTION (2019)

Article Multidisciplinary Sciences

Draft genome of Tanacetum cinerariifolium, the natural source of mosquito coil

Takanori Yamashiro et al.

SCIENTIFIC REPORTS (2019)

Article Biochemistry & Molecular Biology

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

Robert M. Waterhouse et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Review Biochemistry & Molecular Biology

Ribosome-Inactivating Proteins from Plants: A Historical Overview

Andrea Bolognesi et al.

MOLECULES (2016)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

InterProScan 5: genome-scale protein function classification

Philip Jones et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

Marten Boetzer et al.

BMC BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

The tobacco genome sequence and its comparison with those of tomato and potato

Nicolas Sierro et al.

NATURE COMMUNICATIONS (2014)

Article Biotechnology & Applied Microbiology

Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes

David Williams et al.

BMC GENOMICS (2013)

Article Biochemistry & Molecular Biology

A Trichome-Specific Linoleate Lipoxygenase Expressed During Pyrethrin Biosynthesis in Pyrethrum

Aldana M. Ramirez et al.

LIPIDS (2013)

Article Biochemical Research Methods

GapFiller: a de novo assembly approach to fill the gap within paired reads

Francesca Nadalin et al.

BMC BIOINFORMATICS (2012)

Article Biochemical Research Methods

PANDAseq: PAired-eND Assembler for Illumina sequences

Andre P. Masella et al.

BMC BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

Philippe Lamesch et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

Guillaume Marcais et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

Carlos Llorens et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Biochemical Research Methods

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

Mario Stanke et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

The rice annotation project database (RAP-DB): 2008 update

Tsuyoshi Tanaka et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

ClustalW-MPI: ClustalW analysis using distributed and parallel computing

KB Li

BIOINFORMATICS (2003)

Article Multidisciplinary Sciences

Chrysanthemyl diphosphate synthase:: Isolation of the gene and characterization of the recombinant non-head-to-tail monoterpene synthase from Chrysanthemum cinerariaefolium

SB Rivera et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)