4.7 Article

Transcriptome Analysis to Identify Genes Related to Flowering Reversion in Tomato

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Plant Sciences

The splicing factor 1-FLOWERING LOCUS M module spatially regulates temperature-dependent flowering by modulating FLOWERING LOCUS T and LEAFY expression

Keh Chien Lee et al.

Summary: The AtSF1-FLM module spatially controls temperature-dependent flowering by negatively regulating the expression of FT and LFY in the leaf and shoot apex, respectively. The study reveals the genetic and molecular interactions among AtSF1, FLM, FT, and LFY, and the regulation mechanism of temperature-responsive flowering.

PLANT CELL REPORTS (2022)

Article Plant Sciences

Transcriptome and miRNAome analysis reveals components regulating tissue differentiation of bamboo shoots

Ying Li et al.

Summary: This study analyzed the regulatory networks involved in primary thickening and their dynamics during bamboo growth, revealing the role of miRNA-gene-phytohormone networks. The findings provide insights into the molecular mechanisms underlying wood formation and properties in bamboo.

PLANT PHYSIOLOGY (2022)

Article Plant Sciences

Overexpression of PvSTK1 gene from Switchgrass (Panicum virgatum L.) affects flowering time and development of floral organ in transgenic Arabidopsis thaliana

Kunliang Xie et al.

Summary: Flowering is a crucial stage in the plant life cycle, and delaying flowering can increase biomass yield and saccharification efficiency in switchgrass. This study identified several genes related to flower development, and one of them, PvSTK1, was found to be important in regulating flowering and floral organ development.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2022)

Article Biochemistry & Molecular Biology

Transcriptome Analysis Reveals the Response Mechanism of Frl-Mediated Resistance to Fusarium oxysporum f. sp. radicis-lycopersici (FORL) Infection in Tomato

Yuqing Sun et al.

Summary: This study analyzed transcriptome data of FCRR-resistant and susceptible tomato cultivars and identified differential gene expression and enriched gene families related to plant disease resistance. The findings provide valuable disease resistance resources for tomato breeding and genetic resources for the screening and cloning of FCRR resistance genes.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Review Plant Sciences

Transport mechanisms of plant hormones

Moran Anfang et al.

Summary: Plant growth, development, and response to the environment are regulated by hormones, with plants having the ability to control hormone distribution spatially. These hormones are transported by various transporters, leading to a better understanding of hormone substrate specificity and genetic redundancy in hormone transport. Plants also exhibit subcellular, cell-to-cell, and long-distance hormone movement, as well as local hormone sinks that influence hormone-mediated responses.

CURRENT OPINION IN PLANT BIOLOGY (2021)

Article Multidisciplinary Sciences

Transcriptional control of local auxin distribution by the CsDFB1-CsPHB module regulates floral organogenesis in cucumber

Jing Nie et al.

Summary: CsDFB1 functions as a transcriptional regulator of local auxin distribution in cucumber, impacting floral organogenesis and vascular differentiation. It interacts with CsPHB to regulate the expression of genes involved in auxin biosynthesis and transport, thereby playing a pivotal role in auxin distribution. This CsDFB1-CsPHB module represents a regulatory pathway governing floral development and vascular patterning in cucumber.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Genetics & Heredity

Evaluation of the MGISEQ-2000 Sequencing Platform for Illumina Target Capture Sequencing Libraries

Jidong Lang et al.

Summary: In this study, the performance of Illumina Nextseq500 and MGISEQ-2000 sequencing platforms was evaluated, showing high consistency in hotspot mutation analysis results but significant differences in fragment loss in certain size ranges. This suggests good compatibility between different sequencing libraries and platforms, but careful consideration of protocols and platform selection is necessary based on research goals.

FRONTIERS IN GENETICS (2021)

Article Biochemistry & Molecular Biology

Transcriptome Analysis of Flower Development and Mining of Genes Related to Flowering Time in Tomato (Solanum lycopersicum)

Hexuan Wang et al.

Summary: This research conducted transcriptome sequencing of early flower buds and flowers from both a late-flowering and an early-flowering tomato material, identifying 49 candidate genes related to flowering time and flower development. Predictions were made on the early flowering of the early-maturing material based on the expression patterns of these candidate genes, with a focus on their involvement in hormone regulation. The study provides a foundation for future functional verification and a more comprehensive exploration of the molecular mechanisms of tomato flowering time.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Plant Sciences

Dissection of floral transition by single-meristem transcriptomes at high temporal resolution

Zohar Meir et al.

Summary: High temporal resolution analysis of individual shoot meristem transcriptomes in wild-type and mutant tomato provides precise information on gene expression patterns during the transition from vegetative to floral growth, revealing genetic hierarchies.

NATURE PLANTS (2021)

Article Plant Sciences

SlGT11 controls floral organ patterning and floral determinacy in tomato

Liling Yang et al.

BMC PLANT BIOLOGY (2020)

Review Biochemical Research Methods

Interpretation of differential gene expression results of RNA-seq data: review and integration

Adam McDermaid et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Plant Sciences

SPL7 and SPL8 represent a novel flowering regulation mechanism in switchgrass

Jiqing Gou et al.

NEW PHYTOLOGIST (2019)

Article Genetics & Heredity

Evolution of buffering in a genetic circuit controlling plant stem cell proliferation

Daniel Rodriguez-Leal et al.

NATURE GENETICS (2019)

Article Biotechnology & Applied Microbiology

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Daehwan Kim et al.

NATURE BIOTECHNOLOGY (2019)

Article Plant Sciences

Phalaenopsis flowering locus VE regulates floral organ maturation

Kah Wee Koh et al.

PLANT CELL REPORTS (2018)

Article Plant Sciences

Using Transcriptome Analysis to Identify Genes Involved in Switchgrass Flower Reversion

Wang Yongfeng et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Plant Sciences

Floral Organogenesis: When Knowing Your ABCs Is Not Enough

Bennett Thomson et al.

PLANT PHYSIOLOGY (2017)

Article Ecology

Macroevolutionary synthesis of flowering plant sexual systems

Emma E. Goldberg et al.

EVOLUTION (2017)

Review Plant Sciences

Epigenetic processes in flowering plant reproduction

Guifeng Wang et al.

JOURNAL OF EXPERIMENTAL BOTANY (2017)

Article Plant Sciences

The control of flowering time by environmental factors

Lae-Hyeon Cho et al.

PLANT JOURNAL (2017)

Review Biology

Flowering responses to light and temperature

Li Li et al.

SCIENCE CHINA-LIFE SCIENCES (2016)

Review Biochemistry & Molecular Biology

Molecular and regulatory mechanisms controlling floral organ development

Darragh Stewart et al.

FEBS JOURNAL (2016)

Article Multidisciplinary Sciences

Functional Analysis of GmCPDs and Investigation of Their Roles in Flowering

Miao Wang et al.

PLOS ONE (2015)

Article Biochemistry & Molecular Biology

Isolation and Characterization of the Brassinosteroid Receptor Gene (GmBRI1) from Glycine max

Miao Wang et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2014)

Review Plant Sciences

Regulation of flowering time by the miR156-mediated age pathway

Jia-Wei Wang

JOURNAL OF EXPERIMENTAL BOTANY (2014)

Article Multidisciplinary Sciences

Gibberellin Acts Positively Then Negatively to Control Onset of Flower Formation in Arabidopsis

Nobutoshi Yamaguchi et al.

SCIENCE (2014)

Article Plant Sciences

Post-fertilization expression of FLOWERING LOCUS T suppresses reproductive reversion

Liangyu Liu et al.

FRONTIERS IN PLANT SCIENCE (2014)

Article Biochemical Research Methods

Floral reversion mechanism in longan (Dimocarpus longan Lour.) revealed by proteomic and anatomic analyses

Xiangrong You et al.

JOURNAL OF PROTEOMICS (2012)

Article Genetics & Heredity

Synchronization of the flowering transition by the tomato TERMINATING FLOWER gene

Cora A. MacAlister et al.

NATURE GENETICS (2012)

Review Plant Sciences

Florigenic and Antiflorigenic Signaling in Plants

Ianis G. Matsoukas et al.

PLANT AND CELL PHYSIOLOGY (2012)

Review Biochemistry & Molecular Biology

Auxin-Cytokinin Interaction Regulates Meristem Development

Ying-Hua Su et al.

MOLECULAR PLANT (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Review Biochemistry & Molecular Biology

Developing a model of plant hormone interactions

Yu Hua Wang et al.

PLANT SIGNALING & BEHAVIOR (2011)

Article Biochemistry & Molecular Biology

Floral stem cells: from dynamic balance towards termination

Bo Sun et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2010)

Review Cell Biology

Floral organ identity: 20 years of ABCs

Barry Causier et al.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2010)

Article Genetics & Heredity

DEP and AFO Regulate Reproductive Habit in Rice

Kejian Wang et al.

PLOS GENETICS (2010)

Article Biochemical Research Methods

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

The balance between CONSTANS and TEMPRANILLO activities determines FT expression to trigger flowering

Cristina Castillejo et al.

CURRENT BIOLOGY (2008)

Article Agronomy

Phenotypic and genetic characterization of the pistillate mutation in tomato

Irene Olimpieri et al.

THEORETICAL AND APPLIED GENETICS (2008)

Review Biochemistry & Molecular Biology

How floral meristems are built

Miguel A. Blazquez et al.

PLANT MOLECULAR BIOLOGY (2006)

Article Plant Sciences

Role of auxin in regulating Arabidopsis flower development

R Aloni et al.

PLANTA (2006)

Review Plant Sciences

Mechanisms and function of flower and inflorescence reversion

F Tooke et al.

JOURNAL OF EXPERIMENTAL BOTANY (2005)

Article Plant Sciences

Reversion of flowering in Glycine max (Fabaceae)

CF Washburn et al.

AMERICAN JOURNAL OF BOTANY (2000)