相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2022)
Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19
Avraham Unterman et al.
NATURE COMMUNICATIONS (2022)
Associations Between IFI44L Gene Variants and Rates of Respiratory Tract Infections During Early Childhood
Johanna Lempainen et al.
JOURNAL OF INFECTIOUS DISEASES (2021)
HRT Atlas v1.0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets
Bidossessi Wilfried Hounkpe et al.
NUCLEIC ACIDS RESEARCH (2021)
Liftoff: accurate mapping of gene annotations
Alaina Shumate et al.
BIOINFORMATICS (2021)
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
Huaiyu Mi et al.
NUCLEIC ACIDS RESEARCH (2021)
The Gene Ontology resource: enriching a GOld mine
Seth Carbon et al.
NUCLEIC ACIDS RESEARCH (2021)
IFI44L expression is regulated by IRF-1 and HIV-1
Yutong Li et al.
FEBS OPEN BIO (2021)
Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees
Briana E. Mittleman et al.
ELIFE (2021)
A high-quality bonobo genome refines the analysis of hominid evolution
Yafei Mao et al.
NATURE (2021)
Primate innate immune responses to bacterial and viral pathogens reveals an evolutionary trade-off between strength and specificity
Mohamed B. F. Hawash et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures
Raquel Garcia-Perez et al.
NATURE COMMUNICATIONS (2021)
DescribePROT: database of amino acid-level protein structure and function predictions
Bi Zhao et al.
NUCLEIC ACIDS RESEARCH (2021)
Human Inborn Errors of Immunity: 2019 Update on the Classification from the International Union of Immunological Societies Expert Committee
Stuart G. Tangye et al.
JOURNAL OF CLINICAL IMMUNOLOGY (2020)
RIPK3 Promotes JEV Replication in Neurons via Downregulation of IFI44L
Peiyu Bian et al.
FRONTIERS IN MICROBIOLOGY (2020)
Interferon-Induced Protein 44 and Interferon-Induced Protein 44-Like Restrict Replication of Respiratory Syncytial Virus
D. C. Busse et al.
JOURNAL OF VIROLOGY (2020)
Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients
Jerome Hadjadj et al.
SCIENCE (2020)
Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses
Eran Mick et al.
NATURE COMMUNICATIONS (2020)
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility
Wesley C. Warren et al.
SCIENCE (2020)
Single-Cell Transcriptome Analysis Highlights a Role for Neutrophils and Inflammatory Macrophages in the Pathogenesis of Severe COVID-19
Hibah Shaath et al.
CELLS (2020)
TranscriptClean: variant-aware correction of indels, mismatches and splice junctions in long-read transcripts
Dana Wyman et al.
BIOINFORMATICS (2019)
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
Yuxing Liao et al.
NUCLEIC ACIDS RESEARCH (2019)
Defining the genetic and evolutionary architecture of alternative splicing in response to infection
Maxime Rotival et al.
NATURE COMMUNICATIONS (2019)
SCRIBER: accurate and partner type-specific prediction of protein-binding residues from proteins sequences
Jian Zhang et al.
BIOINFORMATICS (2019)
What Are 3′ UTRs Doing?
Christine Mayr
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2019)
Epstein-Barr virus reprograms human B lymphocytes immediately in the prelatent phase of infection
Paulina Mrozek-Gorska et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Tissue-specific genes as an underutilized resource in drug discovery
Maria Ryaboshapkinad et al.
SCIENTIFIC REPORTS (2019)
A catalog of single nucleotide changes distinguishing modern humans from archaic hominins
Martin Kuhlwilm et al.
SCIENTIFIC REPORTS (2019)
Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing
Laura M. Agosto et al.
GENOME RESEARCH (2019)
Realizing the potential of full-length transcriptome sequencing
Ashley Byrne et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants
Yaoxi He et al.
NATURE COMMUNICATIONS (2019)
TissueEnrich: Tissue-specific gene enrichment analysis
Ashish Jain et al.
BIOINFORMATICS (2019)
Alu insertion variants alter mRNA splicing
Lindsay M. Payer et al.
NUCLEIC ACIDS RESEARCH (2019)
Splice-Junction-Based Mapping of Alternative Isoforms in the Human Proteome
Edward Lau Yu Han et al.
CELL REPORTS (2019)
Expression of USP18 and IL2RA Is Increased in Individuals Receiving Latent Tuberculosis Treatment with Isoniazid
Eleane de Oyarzabal et al.
JOURNAL OF IMMUNOLOGY RESEARCH (2019)
Multilayered control of exon acquisition permits the emergence of novel forms of regulatory control
Nesli Avgan et al.
GENOME BIOLOGY (2019)
APPRIS 2017: principal isoforms for multiple gene sets
Jose Manuel Rodriguez et al.
NUCLEIC ACIDS RESEARCH (2018)
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
Manuel Tardaguila et al.
GENOME RESEARCH (2018)
Predominant patterns of splicing evolution on human, chimpanzee and macaque evolutionary lineages
Jieyi Xiong et al.
HUMAN MOLECULAR GENETICS (2018)
Developmental Loci Harbor Clusters of Accelerated Regions That Evolved Independently in Ape Lineages
Dennis Kostka et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Conservation, evolution, and regulation of splicing during prefrontal cortex development in humans, chimpanzees, and macaques
Pavel V. Mazin et al.
RNA (2018)
High-resolution comparative analysis of great ape genomes
Zev N. Kronenberg et al.
SCIENCE (2018)
The emerging roles of ribosomal histidyl hydroxylases in cell biology, physiology and disease
James R. Bundred et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2018)
Transcriptional fates of human-specific segmental duplications in brain
Max L. Dougherty et al.
GENOME RESEARCH (2018)
Isoform-Level Interpretation of High-Throughput Proteomics Data Enabled by Deep Integration with RNA-seq
Becky C. Carlyle et al.
JOURNAL OF PROTEOME RESEARCH (2018)
Gene expression variability across cells and species shapes innate immunity
Tzachi Hagai et al.
NATURE (2018)
Alternative splicing and the evolution of phenotypic novelty
Stephen J. Bush et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Genome-wide associations of CD46 and IFI44L genetic variants with neutralizing antibody response to measles vaccine
Iana H. Haralambieva et al.
HUMAN GENETICS (2017)
Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events
Shi-Jian Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts
Robin van der Lee et al.
NUCLEIC ACIDS RESEARCH (2017)
Alternative Splicing May Not Be the Key to Proteome Complexity
Michael L. Tress et al.
TRENDS IN BIOCHEMICAL SCIENCES (2017)
Impact of Alternative Splicing on the Human Proteome
Yansheng Liu et al.
CELL REPORTS (2017)
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data
Yuxin Chen et al.
GIGASCIENCE (2017)
RNA mis-splicing in disease
Marina M. Scotti et al.
NATURE REVIEWS GENETICS (2016)
De Novo Mutations in SON Disrupt RNA Splicing of Genes Essential for Brain Development and Metabolism, Causing an Intellectual-Disability Syndrome
Jung-Hyun Kim et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2016)
De Novo Truncating Variants in SON Cause Intellectual Disability, Congenital Malformations, and Failure to Thrive
Mari J. Tokita et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2016)
Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes
Matthieu Deschamps et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2016)
IFI44L promoter methylation as a blood biomarker for systemic lupus erythematosus
Ming Zhao et al.
ANNALS OF THE RHEUMATIC DISEASES (2016)
Diagnostic Test Accuracy of a 2-Transcript Host RNA Signature for Discriminating Bacterial vs Viral Infection in Febrile Children
Jethro A. Herberg et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2016)
Analysis of protein-coding genetic variation in 60,706 humans
Monkol Lek et al.
NATURE (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
Rrp15 affects cell cycle, proliferation, and apoptosis in NIH3T3 cells
Tao Wu et al.
FEBS OPEN BIO (2016)
Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage
Charlotte Soneson et al.
GENOME BIOLOGY (2016)
Adaptively introgressed Neandertal haplotype at the OAS locus functionally impacts innate immune responses in humans
Aaron J. Sams et al.
GENOME BIOLOGY (2016)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping (vol 159, pg 1665, 2014)
Suhas S. P. Rao et al.
CELL (2015)
CYLD-Mediated Signaling and Diseases
Bryan J. Mathis et al.
CURRENT DRUG TARGETS (2015)
Most Highly Expressed Protein-Coding Genes Have a Single Dominant Isoform
Iakes Ezkurdia et al.
JOURNAL OF PROTEOME RESEARCH (2015)
Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout Strains
Marta Isasa et al.
JOURNAL OF PROTEOME RESEARCH (2015)
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
Kristin G. Ardlie et al.
SCIENCE (2015)
Origins and Impacts of New Mammalian Exons
Jason J. Merkin et al.
CELL REPORTS (2015)
Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level
Federico Abascal et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Chromosome congression is promoted by CENP-Q- and CENP-E-dependent pathways
James Bancroft et al.
JOURNAL OF CELL SCIENCE (2015)
LoRDEC: accurate and efficient long read error correction
Leena Salmela et al.
BIOINFORMATICS (2014)
Common variants associated with general and MMR vaccine-related febrile seizures
Bjarke Feenstra et al.
NATURE GENETICS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
New Centromere Autoantigens Identified in Systemic Sclerosis Using Centromere Protein Microarrays
Guang Song et al.
JOURNAL OF RHEUMATOLOGY (2013)
Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq
Gloria M. Sheynkman et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Widespread splicing changes in human brain development and aging
Pavel Mazin et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
Detecting differential usage of exons from RNA-seq data
Simon Anders et al.
GENOME RESEARCH (2012)
SON Controls Cell-Cycle Progression by Coordinated Regulation of RNA Splicing
Eun-Young Ahn et al.
MOLECULAR CELL (2011)
Deletion 17q12 Is a Recurrent Copy Number Variant that Confers High Risk of Autism and Schizophrenia
Daniel Moreno-De-Luca et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2010)
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
Miklos Csuroes
BIOINFORMATICS (2010)
CYLD: a tumor suppressor deubiquitinase regulating NF-kappa B activation and diverse biological processes
S-C Sun
CELL DEATH AND DIFFERENTIATION (2010)
Clinical spectrum associated with recurrent genomic rearrangements in chromosome 17q12
Sandesh Chakravarthy Sreenath Nagamani et al.
EUROPEAN JOURNAL OF HUMAN GENETICS (2010)
Sex-specific and lineage-specific alternative splicing in primates
Ran Blekhman et al.
GENOME RESEARCH (2010)
From evolutionary genetics to human immunology: how selection shapes host defence genes
Luis B. Barreiro et al.
NATURE REVIEWS GENETICS (2010)
Functional Comparison of Innate Immune Signaling Pathways in Primates
Luis B. Barreiro et al.
PLOS GENETICS (2010)
Naturally occurring short splice variant of CYLD positively regulates dendritic cell function
Cathy Cecilia Srokowski et al.
BLOOD (2009)
Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery
Schraga Schwartz et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication
Maria Francesca Cardone et al.
GENOME BIOLOGY (2008)
Exon creation and establishment in human genes
Andre Corvelo et al.
GENOME BIOLOGY (2008)
Recurrent reciprocal genomic Rearrangements of 17q12 are associated with renal disease, diabetes, and epilepsy
Heather C. Mefford et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
Regulation of B cell homeostasis and activation by the tumor suppressor gene CYLD
Nadine Hoevelmeyer et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2007)
Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons
Xiang H. -F. Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Accelerated evolution of nervous system genes in the origin of Homo sapiens
S Dorus et al.
CELL (2004)
Untranslated regions of mRNAs
Flavio Mignone et al.
GENOME BIOLOGY (2002)
Controlling the false discovery rate in behavior genetics research
Y Benjamini et al.
BEHAVIOURAL BRAIN RESEARCH (2001)
Transcription repression of human hepatitis B virus genes by negative regulatory element-binding protein/SON
CT Sun et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)