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Molecular adaptations during viral epidemics

EMBO REPORTS (2022)

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Article Microbiology

SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape

Sandile Cele et al.

Summary: Characterizing the evolution of SARS-CoV-2 in an individual with advanced HIV disease in South Africa, this study found that the evolved virus showed immune escape of vaccines and enhanced escape of Delta immunity. This suggests that immune-compromised hosts may play a significant role in the evolution of the virus.

CELL HOST & MICROBE (2022)

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Article Multidisciplinary Sciences

SARS-CoV-2 infection in free-ranging white-tailed deer

Vanessa L. Hale et al.

Summary: Research shows that free-ranging white-tailed deer in northeast Ohio, USA are highly susceptible to SARS-CoV-2 infection, potentially enabling the virus to be transmitted in wildlife, opening up new pathways for evolution.

NATURE (2022)

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Article Multidisciplinary Sciences

Striking antibody evasion manifested by the Omicron variant of SARS-CoV-2

Lihong Liu et al.

Summary: The B.1.1.529/Omicron variant of SARS-CoV-2, initially detected in southern Africa, has rapidly spread globally and is expected to become dominant due to its enhanced transmissibility in the coming weeks. This variant poses a threat to the efficacy of current COVID-19 vaccines and antibody therapies due to its significant antibody resistance. Even individuals who have received vaccines and booster doses may have reduced neutralizing activity against B.1.1.529.

NATURE (2022)

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Article Multidisciplinary Sciences

A highly virulent variant of HIV-1 circulating in the Netherlands

Chris Wymant et al.

Summary: A highly virulent variant of subtype-B HIV-1 was discovered in the Netherlands. Infected individuals with this variant had significantly higher viral loads and faster decline in CD4 cells compared to other subtype-B strains. The increased virulence is attributed to the viral strain, and the variant emerged in the 1990s with increased transmissibility and an unfamiliar molecular mechanism of virulence.

SCIENCE (2022)

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Article Virology

An Update of Orthopoxvirus Molecular Evolution

Igor V. Babkin et al.

Summary: The molecular evolution of orthopoxviruses was analyzed based on data from ancient VARV DNA and DNA of new orthopoxvirus species, estimating their emergence times. It was found that orthopoxviruses of the Old and New Worlds separated around 40,000 years ago, and recently discovered virus species separated around 10,000-20,000 years ago.

VIRUSES-BASEL (2022)

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Article Tropical Medicine

The changing epidemiology of human monkeypox—A potential threat? A systematic review

Eveline M. Bunge et al.

PLoS Neglected Tropical Diseases (2022)

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Article Microbiology

Epistasis at the SARS-CoV-2 Receptor-Binding Domain Interface and the Propitiously Boring Implications for Vaccine Escape

Nash D. Rochman et al.

Summary: This study analyzed the impact of receptor-binding domain mutations in the SARS-CoV-2 virus and its Delta, Gamma, and Omicron variants on the risk of antibody escape. The results suggest that although Omicron poses new evolutionary risks compared to Delta, structural constraints on the receptor-binding domain make continued evolution towards more complete vaccine escape unlikely.

MBIO (2022)

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Article Infectious Diseases

Pan-ebolavirus serology study of healthcare workers in the Mbandaka Health Region, Democratic Republic of the Congo

Kelly C. L. Shaffer et al.

Summary: The study found evidence of possible exposure to ebolaviruses among healthcare workers in the Mbandaka region of the Democratic Republic of the Congo, with certain positions showing higher seroreactivity possibly due to less training and limited access to personal protective equipment. This suggests that exposure to ebolaviruses may be more common than previously thought, especially among individuals with lower-level healthcare roles.

PLOS NEGLECTED TROPICAL DISEASES (2022)

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Article Multidisciplinary Sciences

Human pathogenic RNA viruses establish noncompeting lineages by occupying independent niches

Pascal Mutz et al.

Summary: This study conducted a large-scale analysis of 27 human pathogenic RNA viruses, and found that different lineages of viruses have low competition and may occupy different ecological niches for transmission. The turnover rate of virus lineages at the global scale is slow, while the mutation rate within a lineage is fast. These findings are important for the prevention and control of future pandemics.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

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Article Chemistry, Physical

Insights from computational analysis: how does the SARS-CoV-2 Delta (B.1.617.2) variant hijack ACE2 more effectively?

Danyang Xiong et al.

Summary: This study elucidates the binding mechanism of SARS-CoV-2 Delta variant, which has increased infectivity, through molecular dynamics simulations and energy analysis. The study also provides a preliminary evaluation of the changes in the binding ability of Delta variant with neutralizing monoclonal antibodies. The findings offer important theoretical insights for the development of novel targeted RBD drugs and antibodies.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2022)

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Article Biochemistry & Molecular Biology

Lost in deletion: The enigmatic ORF8 protein of SARS-CoV-2

Luca Zinzula

Summary: The protein encoded by the ORF8 gene in SARS-CoV-2 plays important roles in viral replication, modulation of host cell metabolism, and evasion of immune responses. Virus variants with a deleted ORF8 gene have been associated with milder symptoms and better disease outcomes.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2021)

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Article Microbiology

Complete Mapping of Mutations to the SARS-CoV-2 Spike Receptor-Binding Domain that Escape Antibody Recognition

Allison J. Greaney et al.

Summary: Antibodies targeting the SARS-CoV-2 spike receptor-binding domain (RBD) are key in neutralizing antibody responses, and a deep mutational scanning method was used to assess the impact of all amino-acid mutations in the RBD on antibody binding with 10 human monoclonal antibodies. The study identified the clustered escape mutations in different surfaces of the RBD that correspond to structurally defined antibody epitopes, showing that even antibodies targeting the same surface can have distinct escape mutations.

CELL HOST & MICROBE (2021)

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Article Multidisciplinary Sciences

Loss of furin cleavage site attenuates SARS-CoV-2 pathogenesis

Bryan A. Johnson et al.

Summary: The genetic mutation in SARS-CoV-2 resulted in better fitness in some cells but lower replication capacity in human respiratory cell lines. Despite reducing disease symptoms, the Delta PRRA mutant provided protection against rechallenge with the wildtype SARS-CoV-2.

NATURE (2021)

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Article Multidisciplinary Sciences

Anomalous collapses of Nares Strait ice arches leads to enhanced export of Arctic sea ice

G. W. K. Moore et al.

Summary: Ice arches at the northern and southern ends of Nares Strait, a key passage in the Arctic, are forming for shorter durations, leading to increased ice transport and accelerating the export of multi-year ice.

NATURE COMMUNICATIONS (2021)

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Article Genetics & Heredity

Analysis of an Ebola virus disease survivor whose host and viral markers were predictive of death indicates the effectiveness of medical countermeasures and supportive care

Andrew Bosworth et al.

Summary: The study of an UK EVD patient showed that both virus and host markers were predictive of the patient’s survival outcome. Despite an initially unfavorable prognosis, the comprehensive supportive care and application of medical countermeasures proved to be beneficial. The recurrence infection of the UK patient indicated a potential mechanism of prolonged viral replication.

GENOME MEDICINE (2021)

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Article Public, Environmental & Occupational Health

Emergence of SARS-CoV-2 B.1.1.7 Lineage — United States, December 29, 2020–January 12, 2021

Summer E. Galloway et al.

MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT (2021)

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Article Microbiology

Identification of SARS-CoV-2 spike mutations that attenuate monoclonal and serum antibody neutralization

Zhuoming Liu et al.

Summary: The study found that antibodies targeting the SARS-CoV-2 spike protein have escape mutations, different monoclonal antibodies have unique resistance profiles, some mutants are resistant to multiple antibodies while some variants can escape neutralization by convalescent sera. Comparing antibody-mediated mutations with circulating SARS-CoV-2 sequences revealed substitutions that may weaken neutralizing immune responses in some individuals, warranting further investigation.

CELL HOST & MICROBE (2021)

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Article Virology

Loss of the Vaccinia Virus 35-Amino-Acid Hydrophobic O3 Protein Is Partially Compensated by Mutations in the Transmembrane Domains of Other Entry Proteins

Andrew Tak et al.

Summary: Experimental evolution showed adaptive mutations in viruses lacking the O3 gene, with variants containing F9L, L5R, and D8L mutations exhibiting higher virus titers. The F9L mutation appeared earlier in three independent passages than the L5R and D8L mutations. Further analysis revealed that the adaptive F9L mutants had increased infectivity, faster cell entry, and enhanced EFC assembly.

JOURNAL OF VIROLOGY (2021)

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Article Virology

Rapid Evolution of Enhanced Zika Virus Virulence during Direct Vertebrate Transmission Chains

Kasen K. Riemersma et al.

Summary: The Zika virus can rapidly adapt to a mammalian host through direct mosquito-to-mouse transmission chains, leading to increased replication and enhanced virulence in mice. This highlights that direct human-to-human transmission poses a greater threat to public health than currently realized.

JOURNAL OF VIROLOGY (2021)

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Article Multidisciplinary Sciences

A mutation-mediated evolutionary adaptation of Zika virus in and mammalian host

Xi Yu et al.

Summary: The study found that a T to A mutation in the Zika virus made it easier for the virus to be transmitted by mosquitoes and infect human cells and immunodeficient mice, facilitating the maturation of structural proteins and the formation of infectious viral particles.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

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Article Biology

Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2

Ilya R. Fischhoff et al.

Summary: Transmission of SARS-CoV-2 between humans and animals can lead to establishment of virus reservoirs in wildlife, posing a threat to efforts to control COVID-19 and protect vulnerable animal populations. By combining ecological and biological traits of species with modeling of host-virus interactions using machine learning, predictions about the zoonotic capacity of SARS-CoV-2 for over 5000 mammals were made, revealing enhanced transmission risk from common mammals and geographic overlap with global COVID-19 hotspots.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2021)

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Article Multidisciplinary Sciences

Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

Dami A. Collier et al.

Summary: The B.1.1.7 variant of SARS-CoV-2 exhibited reduced neutralization by vaccines and antibodies from recovered COVID-19 patients, with a more substantial loss seen when introducing the E484K mutation. This mutation poses a threat to the efficacy of the BNT162b2 vaccine.

NATURE (2021)

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Article Biochemistry & Molecular Biology

SARS-CoV-2 variants B.1.351 and P.1 escape from neutralizing antibodies

Markus Hoffmann et al.

Summary: The emerging SARS-CoV-2 variants may exhibit resistance to existing neutralizing antibodies and treatments, which could have significant implications for pandemic containment efforts.

CELL (2021)

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Article Biochemistry & Molecular Biology

Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant

Xianding Deng et al.

Summary: A new SARS-CoV-2 variant named B.1.427/B.1.429 was identified in California, with increased transmissibility and carrying three mutations in spike protein, including L452R substitution. The variant emerged in May 2020 and became predominant in sequenced cases from September 2020 to January 2021. In vivo viral shedding was increased and antibody neutralization decreased, calling for further investigation.

CELL (2021)

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Letter Cell Biology

The basis of a more contagious 501Y.V1 variant of SARS-CoV-2

Haolin Liu et al.

CELL RESEARCH (2021)

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Article Biology

Template switching and duplications in SARS-CoV-2 genomes give rise to insertion variants that merit monitoring

Sofya K. Garushyants et al.

Summary: The study reveals the presence of various insert sequences in the SARS-CoV-2 genome, which not only reflect virus variance but may also affect its pathogenicity and immune escape. The independent insertion mechanisms play a crucial role in the evolution of the novel coronavirus.

COMMUNICATIONS BIOLOGY (2021)

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Article Multidisciplinary Sciences

Structural impact on SARS-CoV-2 spike protein by D614G substitution

Jun Zhang et al.

Summary: Substitution of aspartic acid (D) with glycine (G) at position 614 in the spike protein of SARS-CoV-2 enhances viral spread. Cryo-electron microscopy structures reveal that the G614 strain has increased infectivity compared to the D614 strain. These findings provide insights for vaccine development and understanding viral entry mechanisms.

SCIENCE (2021)

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Review Immunology

A Structural Landscape of Neutralizing Antibodies Against SARS-CoV-2 Receptor Binding Domain

Ling Niu et al.

Summary: This review summarizes the current understanding of the structural landscape of neutralizing antibodies targeting the RBD of SARS-CoV-2 spike glycoprotein. It discusses the potential impact of identifying sites of vulnerability and the formation of better vaccines and immunotherapeutics. The review also highlights the importance of additional analysis of vaccine-induced nAbs in the development of improved vaccines.

FRONTIERS IN IMMUNOLOGY (2021)

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Article Microbiology

The furin cleavage site in the SARS-CoV-2 spike protein is required for transmission in ferrets

Thomas P. Peacock et al.

Summary: Efficient transmission of SARS-CoV-2 among infected ferrets is dependent on a functional furin cleavage site in the spike protein. The virus has a selective advantage in lung cells and primary human airway epithelial cells due to a polybasic insertion, but replication may be impaired in certain cell lines.

NATURE MICROBIOLOGY (2021)

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Article Multidisciplinary Sciences

The SARS-CoV-2 Spike variant D614G favors an open conformational state

Rachael A. Mansbach et al.

Summary: The emergence of the G-form variant of COVID-19 has led to a more infectious strain with increased viral loads, likely due to changes in protein energetics favoring infection-capable states and enhanced exposure of the receptor binding domain. These findings are crucial for vaccine design.

SCIENCE ADVANCES (2021)

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Article Microbiology

SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity

Chihiro Motozono et al.

Summary: Research has shown that certain mutations in SARS-CoV-2 variants can escape HLA-restricted cellular immunity, increase affinity for host cells, promote viral replication, and potentially affect the evolution of viral phenotypes.

CELL HOST & MICROBE (2021)

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Article Biochemistry & Molecular Biology

Experimental Evidence for Enhanced Receptor Binding by Rapidly Spreading SARS-CoV-2 Variants

Charlie Laffeber et al.

Summary: Different mutations in new variants of SARS-CoV-2 have varying effects on receptor binding affinity, viral transmission, and immune evasion, highlighting the importance of global viral genome surveillance and functional characterization.

JOURNAL OF MOLECULAR BIOLOGY (2021)

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Editorial Material Public, Environmental & Occupational Health

The reproductive number of the Delta variant of SARS-CoV-2 is far higher compared to the ancestral SARS-CoV-2 virus

Ying Liu et al.

Summary: The Delta variant is rapidly replacing other strains of SARS-CoV-2, with a higher R-0 value of 5.08 compared to the ancestral strain's 2.79. Increasing vaccine coverage and strengthening public health measures are now more urgent than ever to control the spread of the virus.

JOURNAL OF TRAVEL MEDICINE (2021)

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Article Multidisciplinary Sciences

Ongoing global and regional adaptive evolution of SARS-CoV-2

Nash D. Rochman et al.

Summary: The evolution of SARS-CoV-2 during the COVID-19 pandemic is primarily characterized by purifying selection, with a small number of sites evolving under positive selection. Variants in the spike protein's receptor-binding domain and the nucleocapsid protein region with NLS are enriched with positively selected amino acid replacements. These replacements form a connected network of apparent epistatic interactions and are indicators of major partitions in the SARS-CoV-2 phylogeny. The global virus diversity has been steadily increasing, with distinct periods based on phylogenetic distances and key mutations.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

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Article Multidisciplinary Sciences

The ORF8 protein of SARS-CoV-2 mediates immune evasion through down-regulating MHC-I

Yiwen Zhang et al.

Summary: COVID-19, caused by SARS-CoV-2, significantly differs from SARS in its clinical and pathological characteristics. The viral protein ORF8 of SARS-CoV-2 interacts with MHC-I molecules, leading to their down-regulation and impairment of antigen presentation system, proposing ORF8 inhibition as a potential strategy for improving immune surveillance.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

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Article Virology

Antibody-Mediated Neutralization of Authentic SARS-CoV-2 B.1.617 Variants Harboring L452R and T478K/E484Q

Alexander Wilhelm et al.

Summary: The study found that SARS-CoV-2 variants harboring the L452R substitution had reduced susceptibility to convalescent and vaccine-elicited sera and mAbs. Compared to the Epsilon variant, both the Kappa and Delta variants showed a greater reduction in neutralization by convalescent sera. Additionally, the Delta variant was resistant to imdemivab but could potentially be overcome with combination therapy involving casirivimab.

VIRUSES-BASEL (2021)

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Article Microbiology

Ancient Gene Capture and Recent Gene Loss Shape the Evolution of Orthopoxvirus-Host Interaction Genes

Tatiana G. Senkevich et al.

Summary: The survival of viruses relies on their ability to resist host defenses and certain genes play a crucial role in this process. Poxviruses, like Orthopoxviruses (ORPV), have a significant number of genes dedicated to counteracting host immunity. Through evolution, ORPV acquired accessory genes in three major waves, leading to gene duplication and the formation of gene families. Interestingly, most accessory genes were lost during ORPV evolution, suggesting a variety of functional interactions within this virus family.

MBIO (2021)

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Article Cell Biology

Intramolecular quality control: HIV-1 envelope gp160 signal-peptide cleavage as a functional folding checkpoint

Nicholas McCaul et al.

Summary: The signal peptide of HIV-1 gp120 has additional functions beyond targeting, including enhancing folding accuracy, delaying folding, and ensuring quality control, which are important for viral fitness. These regulatory roles of signal peptides are likely common in secretory-protein biogenesis.

CELL REPORTS (2021)

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Article Biology

Effects of common mutations in the SARS-CoV-2 Spike RBD and its ligand, the human ACE2 receptor on binding affinity and kinetics

Michael Barton et al.

Summary: The study analyzed the effects of mutations in the Spike protein of SARS-CoV-2 on its interaction with ACE2, finding that most mutations increased affinity with ACE2. Two ACE2 mutations were also found to enhance binding with the Spike protein.

ELIFE (2021)

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Article Biotechnology & Applied Microbiology

Clinical evidence that the pandemic from 1889 to 1891 commonly called the Russian flu might have been an earlier coronavirus pandemic

Harald Brussow et al.

Summary: Medical reports from late 19th century Britain and Germany on patients with the 1889-1891 Russian flu show similarities with COVID-19, such as multisystem affections, respiratory, gastrointestinal, and neurological symptoms, and a protracted recovery. Mortality was higher in elderly subjects, while children were less affected. Trans-species infection between pet animals or horses and humans was also noted, possibly linked to a broad host range bovine coronavirus around 1890.

MICROBIAL BIOTECHNOLOGY (2021)

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Article Biochemistry & Molecular Biology

Functional importance of the D614G mutation in the SARS-CoV-2 spike protein

Cody B. Jackson et al.

Summary: The D614G spike mutation in SARS-CoV-2 virus leads to more efficient infection of cells and animals, without affecting the affinity of the S protein for ACE2. This mutation is significant in the current global pandemic.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2021)

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Article Biochemistry & Molecular Biology

COG database update: focus on microbial diversity, model organisms, and widespread pathogens

Michael Y. Galperin et al.

Summary: The COG database, created in 1997 and most recently updated in 2014, includes extensive information on bacterial and archaeal genomes. The current version introduces new features and plans for future expansion and refinement of annotations.

NUCLEIC ACIDS RESEARCH (2021)

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Review Immunology

Innate Immune Evasion by Human Respiratory RNA Viruses

Marjolein Kikkert

JOURNAL OF INNATE IMMUNITY (2020)

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Article Multidisciplinary Sciences

A pneumonia outbreak associated with a new coronavirus of probable bat origin

Peng Zhou et al.

NATURE (2020)

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Review Genetics & Heredity

From Summary Statistics to Gene Trees: Methods for Inferring Positive Selection

Hussein A. Hejase et al.

TRENDS IN GENETICS (2020)

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Article Pharmacology & Pharmacy

The spike glycoprotein of the new coronavirus 2019-nCoV contains a furinlike cleavage site absent in CoV of the same clade

B. Coutard et al.

ANTIVIRAL RESEARCH (2020)

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Editorial Material Biochemistry & Molecular Biology

A Genomic Perspective on the Origin and Emergence of SARS-CoV-2

Yong-Zhen Zhang et al.

CELL (2020)

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Article Immunology

Characterization of the receptor-binding domain (RBD) of 2019 novel coronavirus: implication for development of RBD protein as a viral attachment inhibitor and vaccine

Wanbo Tai et al.

CELLULAR & MOLECULAR IMMUNOLOGY (2020)

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Article Public, Environmental & Occupational Health

Trends in HIV-2 Diagnoses and Use of the HIV-1/HIV-2 Differentiation Test — United States, 2010–2017

Anne H. Peruski et al.

MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT (2020)

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Article Medicine, General & Internal

Ebola virus disease

Shevin T. Jacob et al.

NATURE REVIEWS DISEASE PRIMERS (2020)

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Review Cell Biology

Influenza A virus PB1-F2 protein: An ambivalent innate immune modulator and virulence factor

Pak-Hin Hinson Cheung et al.

JOURNAL OF LEUKOCYTE BIOLOGY (2020)

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Article Virology

Codon Usage and Phenotypic Divergences of SARS-CoV-2 Genes

Maddalena Dilucca et al.

VIRUSES-BASEL (2020)

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Review Medicine, General & Internal

Middle East respiratory syndrome

Ziad A. Memish et al.

LANCET (2020)

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Article Multidisciplinary Sciences

Human neutralizing antibodies elicited by SARS-CoV-2 infection

Bin Ju et al.

NATURE (2020)

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Article Multidisciplinary Sciences

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

Jun Lan et al.

NATURE (2020)

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Review Chemistry, Multidisciplinary

Structural and functional properties of SARS-CoV-2 spike protein: potential antivirus drug development for COVID-19

Yuan Huang et al.

ACTA PHARMACOLOGICA SINICA (2020)

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Article Virology

Inactivation of Genes by Frameshift Mutations Provides Rapid Adaptation of an Attenuated Vaccinia Virus

Tatiana G. Senkevich et al.

JOURNAL OF VIROLOGY (2020)

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Article Multidisciplinary Sciences

A Zika virus envelope mutation preceding the 2015 epidemic enhances virulence and fitness for transmission

Chao Shan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

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Article Multidisciplinary Sciences

Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses

Ayal B. Gussow et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

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Article Virology

Two Sides of a Coin: a Zika Virus Mutation Selected in Pregnant Rhesus Macaques Promotes Fetal Infection in Mice but at a Cost of Reduced Fitness in Nonpregnant Macaques and Diminished Transmissibility by Vectors

Danilo Lemos et al.

JOURNAL OF VIROLOGY (2020)

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Article Multidisciplinary Sciences

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

Joana Damas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

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Article Biology

Deep phylogeny of cancer drivers and compensatory mutations

Nash D. Rochman et al.

COMMUNICATIONS BIOLOGY (2020)

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Article Multidisciplinary Sciences

Host ANP32A mediates the assembly of the influenza virus replicase

Loic Carrique et al.

NATURE (2020)

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Article Infectious Diseases

Evolutionary dynamics of the SARS-CoV-2 ORF8 accessory gene

Filipe Pereira

INFECTION GENETICS AND EVOLUTION (2020)

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Article Multidisciplinary Sciences

Diverse variola virus (smallpox) strains were widespread in northern Europe in the Viking Age

Barbara Muehlemann et al.

SCIENCE (2020)

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Article Virology

The Roles of prM-E Proteins in Historical and Epidemic Zika Virus-mediated Infection and Neurocytotoxicity

Ge Li et al.

VIRUSES-BASEL (2019)

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Review Virology

Immune System Modulation and Viral Persistence in Bats: Understanding Viral Spillover

Sonu Subudhi et al.

VIRUSES-BASEL (2019)

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Article Multidisciplinary Sciences

Mutations in the HIV-1 envelope glycoprotein can broadly rescue blocks at multiple steps in the virus replication cycle

Rachel Van Duyne et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

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Article Biochemistry & Molecular Biology

How host genetics dictates successful viral zoonosis

Cody J. Warren et al.

PLOS BIOLOGY (2019)

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Article Infectious Diseases

Zika viruses of African and Asian lineages cause fetal harm in a mouse model of vertical transmission

Anna S. Jaeger et al.

PLOS NEGLECTED TROPICAL DISEASES (2019)

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Article Virology

ANP32 Proteins Are Essential for Influenza Virus Replication in Human Cells

Ecco Staller et al.

JOURNAL OF VIROLOGY (2019)

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Article Infectious Diseases

Medical countermeasures during the 2018 Ebola virus disease outbreak in the North Kivu and Ituri Provinces of the Democratic Republic of the Congo: a rapid genomic assessment

Placide Mbala-Kingebeni et al.

LANCET INFECTIOUS DISEASES (2019)

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Review Medicine, General & Internal

Zika Virus Infection - After the Pandemic

Didier Musso et al.

NEW ENGLAND JOURNAL OF MEDICINE (2019)

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Review Microbiology

Key Viral Adaptations Preceding the AIDS Pandemic

Daniel Sauter et al.

CELL HOST & MICROBE (2019)

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Review Microbiology

The evolution of Zika virus from Asia to the Americas

Zhong-Yu Liu et al.

NATURE REVIEWS MICROBIOLOGY (2019)

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Article Environmental Sciences

Enzootic patterns of Middle East respiratory syndrome coronavirus in imported African and local Arabian dromedary camels: a prospective genomic study

Sherif A. El-Kafrawy et al.

LANCET PLANETARY HEALTH (2019)

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Article Parasitology

NS1 codon usage adaptation to humans in pandemic Zika virus

Caio Cesar de Melo Freire et al.

MEMORIAS DO INSTITUTO OSWALDO CRUZ (2018)

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Article Multidisciplinary Sciences

MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity

Daniel K. W. Chu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

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Article Virology

The structural proteins of epidemic and historical strains of Zika virus differ in their ability to initiate viral infection in human host cells

Sandra Bos et al.

VIROLOGY (2018)

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Article Multidisciplinary Sciences

Virulent PB1-F2 residues: effects on fitness of H1N1 influenza A virus in mice and changes during evolution of human influenza A viruses

Irina V. Alymova et al.

SCIENTIFIC REPORTS (2018)

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Article Cell Biology

Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors

Shannon L. M. Whitmer et al.

CELL REPORTS (2018)

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Article Virology

The impact of HIV-1 within-host evolution on transmission dynamics

Kristof Theys et al.

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