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注意:仅列出部分参考文献,下载原文获取全部文献信息。Twenty years of plant genome sequencing: achievements and challenges
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Junjie Cui et al.
HORTICULTURE RESEARCH (2020)
Translation of small downstream ORFs enhances translation of canonical main open reading frames
Qiushuang Wu et al.
EMBO JOURNAL (2020)
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Inaki Merino-Valverde et al.
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Massive haplotypes underlie ecotypic differentiation in sunflowers
Marco Todesco et al.
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Quantification of translation uncovers the functions of the alternative transcriptome
Lorenzo Calviello et al.
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Xin Li et al.
NATURE COMMUNICATIONS (2020)
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Sara Hamzelou et al.
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Triticum population sequencing provides insights into wheat adaptation
Yao Zhou et al.
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eIF4G-driven translation initiation of downstream ORFs in mammalian cells
Risa Nobuta et al.
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Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
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Evolutionary flexibility in flooding response circuitry in angiosperms
Mauricio A. Reynoso et al.
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Bo Song et al.
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Computational resources for ribosome profiling: from database to Web server and software
Hongwei Wang et al.
BRIEFINGS IN BIOINFORMATICS (2019)
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Hong Cheng et al.
GENOME BIOLOGY (2019)
Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data
Pieter Spealman et al.
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Improved Ribo-seq enables identification of cryptic translation events
Florian Erhard et al.
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De novo annotation and characterization of the translatome with ribosome profiling data
Zhengtao Xiao et al.
NUCLEIC ACIDS RESEARCH (2018)
Ribosome elongating footprints denoised by wavelet transform comprehensively characterize dynamic cellular translation events
Zhiyu Xu et al.
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Whole-genome resequencing reveals signatures of selection and timing of duck domestication
Zebin Zhang et al.
GIGASCIENCE (2018)
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Wensheng Wang et al.
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Franziska K. Kretzschmar et al.
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Dmitry E. Andreev et al.
NUCLEIC ACIDS RESEARCH (2017)
Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation
Jeremie Bazin et al.
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Lorenzo Calviello et al.
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Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
Daniel C. Jeffares et al.
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Naibin Duan et al.
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Detecting actively translated open reading frames in ribosome profiling data
Lorenzo Calviello et al.
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Erin E. Heyer et al.
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Carlos Alonso-Blanco et al.
CELL (2016)
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Polly Yingshan Hsu et al.
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Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis
Shengben Li et al.
ELIFE (2016)
Simple and inexpensive ribosome profiling analysis of mRNA translation
David W. Reid et al.
METHODS (2015)
Quantitative profiling of initiating ribosomes in vivo
Xiangwei Gao et al.
NATURE METHODS (2015)
Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis
Piyada Juntawong et al.
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Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq
Julie L. Aspden et al.
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An integrated map of genetic variation from 1,092 human genomes
David M. Altshuler et al.
NATURE (2012)
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
Nicholas T. Ingolia et al.
NATURE PROTOCOLS (2012)
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
Sooncheol Lee et al.
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The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
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Nicholas T. Ingolia et al.
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A map of human genome variation from population-scale sequencing
David Altshuler et al.
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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
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Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes
Celine A. Hayden et al.
BMC BIOLOGY (2007)
Codon usage and tRNA genes in eukaryotes: Correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis
S Kanaya et al.
JOURNAL OF MOLECULAR EVOLUTION (2001)