4.7 Article

Deepening the knowledge of rare diseases dependent on angiogenesis through semantic similarity clustering and network analysis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Oncology

Golgi phosphoprotein 3 promotes angiogenesis and sorafenib resistance in hepatocellular carcinoma via upregulating exosomal miR-494-3p

Ying Gao et al.

Summary: GOLPH3 promotes angiogenesis and sorafenib resistance in hepatocellular carcinoma (HCC) by enhancing the secretion of exosomal miR-494-3p. It is only associated with the expression level of miR-494-3p in exosomes derived from HCC cells.

CANCER CELL INTERNATIONAL (2022)

Review Hematology

Biochemical, molecular and clinical aspects of coagulation factor VII and its role in hemostasis and thrombosis

Francesco Bernardi et al.

Summary: The article highlights the importance of the FVIIa-TF complex in clotting, as well as the clinical implications and genetic variations associated with FVII activity. It discusses the causes, clinical manifestations, treatment options of congenital FVII deficiency, and the role of FVII in cardiovascular disease.

HAEMATOLOGICA (2021)

Article Biology

Multi-faceted semantic clustering with text-derived phenotypes*

Luke T. Slater et al.

Summary: This article explores the generation of multiple semantic similarity scores for patients based on different facets of their phenotypic manifestation, demonstrating the potential of faceted semantic clustering for gaining a deeper and more nuanced understanding of text-derived patient phenotypes and identifying clinically relevant phenotype relationships.

COMPUTERS IN BIOLOGY AND MEDICINE (2021)

Article Multidisciplinary Sciences

Network analysis reveals rare disease signatures across multiple levels of biological organization

Pisanu Buphamalai et al.

Summary: Researchers introduced a network approach to evaluate the impact of rare gene defects across biological scales. They constructed a multiplex network and analyzed rare diseases, discovering distinct phenotypic modules that can predict rare disease gene candidates. These findings open up new avenues for applying network-based tools in cross-scale data integration.

NATURE COMMUNICATIONS (2021)

Article Health Care Sciences & Services

Evaluating, Filtering and Clustering Genetic Disease Cohorts Based on Human Phenotype Ontology Data with Cohort Analyzer

Elena Rojano et al.

Summary: A thorough analysis of pathological traits is crucial for understanding genetic diseases, performing accurate diagnosis, and prescribing personalized treatments. The Cohort Analyzer tool allows for evaluation of phenotyping quality in patient cohorts, identifying patients with similar phenotypic profiles for further analyses. Improved phenotyping is highlighted as essential in the era of personalized medicine.

JOURNAL OF PERSONALIZED MEDICINE (2021)

Article Endocrinology & Metabolism

A Dysregulation of the Prolactin/Vasoinhibin Axis Appears to Contribute to Preeclampsia

Livia Lenke et al.

FRONTIERS IN ENDOCRINOLOGY (2020)

Article Multidisciplinary Sciences

PRIORI-T: A tool for rare disease gene prioritization using MEDLINE

Aditya Rao et al.

PLOS ONE (2020)

Article Biochemical Research Methods

heatmaply: an R package for creating interactive cluster heatmaps for online publishing

Tal Galili et al.

BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

The Human Phenotype Ontology in 2017

Sebastian Koehler et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

Christopher J. Mungall et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Genetics & Heredity

The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease

Tudor Groza et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2015)

Review Biochemistry & Molecular Biology

The role of sphingolipids in endothelial barrier function

Peter L. Jernigan et al.

BIOLOGICAL CHEMISTRY (2015)

Article Mathematics, Interdisciplinary Applications

Ward's Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward's Criterion?

Fionn Murtagh et al.

JOURNAL OF CLASSIFICATION (2014)

Article Biochemistry & Molecular Biology

p53 promotes VEGF expression and angiogenesis in the absence of an intact p21-Rb pathway

M. Farhang Ghahremani et al.

CELL DEATH AND DIFFERENTIATION (2013)

Article Multidisciplinary Sciences

The human gene connectome as a map of short cuts for morbid allele discovery

Yuval Itan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Multidisciplinary Sciences

Somatic Mutation, Genomic Variation, and Neurological Disease

Annapurna Poduri et al.

SCIENCE (2013)

Article Toxicology

The effects of cadmium on VEGF-mediated angiogenesis in HUVECs

Jisun Kim et al.

JOURNAL OF APPLIED TOXICOLOGY (2012)

Article Computer Science, Interdisciplinary Applications

Finding disease similarity based on implicit semantic similarity

Sachin Mathur et al.

JOURNAL OF BIOMEDICAL INFORMATICS (2012)

Review Cell Biology

What is known on angiogenesis-related rare diseases? A systematic review of literature

Luis Rodriguez-Caso et al.

JOURNAL OF CELLULAR AND MOLECULAR MEDICINE (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Review Urology & Nephrology

Angiogenic Factors and Preeclampsia

Sharon E. Maynard et al.

SEMINARS IN NEPHROLOGY (2011)

Article Genetics & Heredity

Pelizaeus-Merzbacher-like Disease Caused by AIMP1/p43 Homozygous Mutation

Miora Feinstein et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2010)

Article Biochemical Research Methods

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms

Andreas Schlicker et al.

BIOINFORMATICS (2010)

Editorial Material Medicine, General & Internal

Prolonged Fever, Hepatosplenomegaly, and Pancytopenia in a 46-Year-Old Woman

Liran Levy et al.

PLOS MEDICINE (2009)

Article Biochemical Research Methods

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R

Peter Langfelder et al.

BIOINFORMATICS (2008)

Review Rheumatology

Mechanisms of Disease: angiogenesis in inflammatory diseases

Zoltan Szekanecz et al.

NATURE CLINICAL PRACTICE RHEUMATOLOGY (2007)

Article Biochemical Research Methods

A new method to measure the semantic similarity of GO terms

James Z. Wang et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

STRING: known and predicted protein-protein associations, integrated and transferred across organisms

C von Mering et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

Angiogenesis and G-protein-coupled receptors:: signals that bridge the gap

DE Richard et al.

ONCOGENE (2001)

Article Immunology

Hemophagocytic syndromes and infection

DN Fisman

EMERGING INFECTIOUS DISEASES (2000)

Review Multidisciplinary Sciences

Angiogenesis in cancer and other diseases

P Carmeliet et al.

NATURE (2000)