4.7 Article

Gene expression variation explains maize seed germination heterosis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis

Dechao Bu et al.

Summary: Gene set enrichment analysis is crucial for extracting biological insights from genome-scale experiments. The latest version of KOBAS, KOBAS-i, introduces a machine learning-based method CGPS, expands exploratory visualization of enriched results, and increases the number of supported species.

NUCLEIC ACIDS RESEARCH (2021)

Article Plant Sciences

Progesterone Promotes Mitochondrial Respiration at the Biochemical and Molecular Level in Germinating Maize Seeds

Hulya Turk

Summary: This study found that progesterone stimulates mitochondrial respiration in germinating maize seeds, promoting seed germination through increased gene expression levels and enzyme activities.

PLANTS-BASEL (2021)

Article Biochemistry & Molecular Biology

KEGG: integrating viruses and cellular organisms

Minoru Kanehisa et al.

Summary: KEGG is a curated resource integrating eighteen databases categorized into systems, genomic, chemical and health information, providing mapping tools for understanding cellular and organism-level functions from genome sequences and other molecular datasets. The network variation maps in the KEGG database show how different pathogens and environmental factors influence cellular signaling pathways.

NUCLEIC ACIDS RESEARCH (2021)

Article Multidisciplinary Sciences

Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis

Lin Shao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biochemistry & Molecular Biology

Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development

Peng Zhou et al.

MOLECULAR PLANT (2019)

Article Biotechnology & Applied Microbiology

An epigenetic breeding system in soybean for increased yield and stability

Sunil K. Kenchanmane Raju et al.

PLANT BIOTECHNOLOGY JOURNAL (2018)

Article Multidisciplinary Sciences

DNA demethylase ROS1 negatively regulates the imprinting of DOGL4 and seed dormancy in Arabidopsis thaliana

Haifeng Zhu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Plant Sciences

Dissecting the Genetic Basis Underlying Combining Ability of Plant Height Related Traits in Maize

Zhiqiang Zhou et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Biochemistry & Molecular Biology

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

Tian Tian et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Plant Sciences

Natural variation for gene expression responses to abiotic stress in maize

Amanda J. Waters et al.

PLANT JOURNAL (2017)

Article Biochemistry & Molecular Biology

Proteomic patterns associated with heterosis

Jiewen Xing et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2016)

Article Biochemical Research Methods

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Mihaela Pertea et al.

NATURE PROTOCOLS (2016)

Article Multidisciplinary Sciences

Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation

Qingzhu Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Evolutionary Biology

Regulatory Divergence between Parental Alleles Determines Gene Expression Patterns in Hybrids

Marie-Christine Combes et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Review Biochemical Research Methods

Studies on the molecular mechanisms of seed germination

Chao Han et al.

PROTEOMICS (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Nonsyntenic Genes Drive Highly Dynamic Complementation of Gene Expression in Maize Hybrids

Anja Paschold et al.

PLANT CELL (2014)

Article Plant Sciences

Variation in allelic expression associated with a recombination hotspot in Zea mays

Jennifer S. Hawkins et al.

PLANT JOURNAL (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Review Plant Sciences

Progress Toward Understanding Heterosis in Crop Plants

Patrick S. Schnable et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64 (2013)

Article Multidisciplinary Sciences

Genomic dosage effects on heterosis in triploid maize

Hong Yao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

MicroRNA Transcriptomic Analysis of Heterosis during Maize Seed Germination

Dong Ding et al.

PLOS ONE (2012)

Article Agriculture, Multidisciplinary

Genome-Wide Transcriptional Analysis of Yield and Heterosis-Associated Genes in Maize (Zea mays L.)

Zhang Ti-fu et al.

JOURNAL OF INTEGRATIVE AGRICULTURE (2012)

Article Biochemical Research Methods

Proteomic analysis of heterosis during maize seed germination

Zhiyuan Fu et al.

PROTEOMICS (2011)

Article Biochemistry & Molecular Biology

Regulatory divergence in Drosophila revealed by mRNA-seq

C. Joel McManus et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Heterosis

James A. Birchler et al.

PLANT CELL (2010)

Article Plant Sciences

Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis

Robert M. Stupar et al.

BMC PLANT BIOLOGY (2008)

Article Biochemistry & Molecular Biology

A heteromeric plastidic pyruvate kinase complex involved in seed oil biosynthesis in Arabidopsis

Carl Andre et al.

PLANT CELL (2007)

Review Plant Sciences

Towards the molecular basis of heterosis

Frank Hochholdinger et al.

TRENDS IN PLANT SCIENCE (2007)

Review Biochemistry & Molecular Biology

Allelic variation and heterosis in maize: How do two halves make more than a whole?

Nathan M. Springer et al.

GENOME RESEARCH (2007)

Article Multidisciplinary Sciences

All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents

RA Swanson-Wagner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Allelic variation of gene expression in maize hybrids

M Guo et al.

PLANT CELL (2004)