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Sergey A. Shmakov et al.
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Mina Yekani et al.
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Jon McGinn et al.
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Bioinformatic evidence of widespread priming in type I and II CRISPR-Cas systems
Thomas J. Nicholson et al.
RNA BIOLOGY (2019)
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Shijie Zhao et al.
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Tony J. Lam et al.
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PLSDB: a resource of complete bacterial plasmids
Valentina Galata et al.
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Tony J. Lam et al.
CRISPR JOURNAL (2019)
MVP: a microbe-phage interaction database
Na L. Gao et al.
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Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
Elliot J. Lefkowitz et al.
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Sergey A. Shmakov et al.
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Shany Doron et al.
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Alexander P. Hynes et al.
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Wendi Zhang et al.
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Norman Goodacre et al.
MSPHERE (2018)
Role of nucleotide identity in effective CRISPR target escape mutations
Tim Kunne et al.
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dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
Matthew R. Olm et al.
ISME JOURNAL (2017)
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Sergey Shmakov et al.
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Sergey A. Shmakov et al.
MBIO (2017)
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Mehrdad Tajkarimi et al.
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Rodrigo Achigar et al.
SCIENTIFIC REPORTS (2017)
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Fasahath Husain et al.
MICROBIAL GENOMICS (2017)
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Benjamin W. Casterline et al.
GUT MICROBES (2017)
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Adrian J. Verster et al.
CELL HOST & MICROBE (2017)
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Christina E. West et al.
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Evolution of the CRISPR-Cas adaptive immunity systems in prokaryotes: models and observations on virus-host coevolution
Eugene V. Koonin et al.
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CRISPR adaptation biases explain preference for acquisition of foreign DNA
Asaf Levy et al.
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Joseph Bondy-Denomy et al.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
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S. Melanie Lee et al.
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Nobuto Takeuchi et al.
JOURNAL OF BACTERIOLOGY (2012)
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Anton Bankevich et al.
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Maria-Jose Lopez-Sanchez et al.
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Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
Ido Yosef et al.
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Ariel D. Weinberger et al.
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Diverse CRISPRs Evolving in Human Microbiomes
Mina Rho et al.
PLOS GENETICS (2012)
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Roger A. Garrett et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2011)
The phage-host arms race: Shaping the evolution of microbes
Adi Stern et al.
BIOESSAYS (2011)
Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
Soley Gudbergsdottir et al.
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The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
Josiane E. Garneau et al.
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FragGeneScan: predicting genes in short and error-prone reads
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Marie Touchon et al.
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Diagnosis and Management of Complicated Intra-Abdominal Infection in Adults and Children: Guidelines by the Surgical Infection Society and the Infectious Diseases Society of America
Joseph S. Solomkin et al.
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BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Phage response to CRISPR-Encoded resistance in Streptococcus thermophilus
Helene Deveau et al.
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Bacteroides: the good, the bad, and the nitty-gritty
Hannah M. Wexler
CLINICAL MICROBIOLOGY REVIEWS (2007)
CRISPR provides acquired resistance against viruses in prokaryotes
Rodolphe Barrangou et al.
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Ann M. O'Hara et al.
EMBO REPORTS (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
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Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Identification of genes that are associated with DNA repeats in prokaryotes
R Jansen et al.
MOLECULAR MICROBIOLOGY (2002)
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