期刊
BIOCHEMICAL JOURNAL
卷 479, 期 16, 页码 1727-1741出版社
PORTLAND PRESS LTD
DOI: 10.1042/BCJ20220200
关键词
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资金
- Fundacao para a Ciencia e Tecnologia (FCT) [PTDC/BBB-BEP/3380/2014]
- Marie Sklodowska-Curie Individual Fellowship [789565]
- FCT [SFRH/BD/51626/2011]
- Fundação para a Ciência e a Tecnologia [PTDC/BBB-BEP/3380/2014, SFRH/BD/51626/2011] Funding Source: FCT
- Marie Curie Actions (MSCA) [789565] Funding Source: Marie Curie Actions (MSCA)
DNA/RNA molecules adopting the left-handed conformation (Z-form) have immunogenic properties and play important roles in immunity and self/non-self-discrimination. Z alpha domains in different proteins recognize and bind left-handed Z-DNA/RNA in a conformation-specific manner, and have been implicated in virus recognition.
DNA/RNA molecules adopting the left-handed conformation (Z-form) have been attributed with immunogenic properties. However, their biological role and importance have been a topic of debate for many years. The discovery of Z-DNA/RNA binding domains (Z alpha domains) in varied proteins that are involved in the innate immune response, such as the interferon inducible form of the RNA editing enzyme ADAR1 (p150), Z-DNA binding protein 1 (ZBP1), the fish kinase PKZ and the poxvirus inhibitor of interferon response E3L, indicates important roles of Z-DNA/RNA in immunity and self/non-self-discrimin-ation. Such Z alpha domain-containing proteins recognize left-handed Z-DNA/RNA in a con-formation-specific manner. Recent studies have implicated these domains in virus recognition. Given these important emerging roles for the Z alpha domains, it is pivotal to understand the mechanism of recognition of the Z-DNA/Z-RNA by these domains. To this end, we assessed the binding thermodynamics of Z alpha domain from ORF112 and ADAR1 on T(CG)3 and T(CG)6 oligonucleotides which have high propensity to adopt the Z-conformation. Our study highlights important differences in the mode of oligonucleo-tide binding by the two Z alpha domains originating from different proteins. Site-directed mutagenesis was employed together with isothermal titration calorimetry to tease apart finer details of the binding thermodynamics. Our work advances the understanding on binding thermodynamics of Z alpha domains to their cognate nucleic acid substrates and paves the ground for future efforts to gain a complete appreciation of this process.
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